Gm16326 Pseudogene Detail

Summary

• Symbol
  Gm16326
• Name
  predicted gene 16326

• Feature Type
  pseudogene
• IDs
  MGI:3840124
  NCBI Gene: 118567503
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:121730315-121730728 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 65.47 cM

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3840124	pseudogene	Chr7:121730188-121730842 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013998	pseudogene	Chr7:126202183-126202596 (+)
A/J	MGP_AJ_G0014017	pseudogene	Chr7:122930491-122930904 (+)
AKR/J	MGP_AKRJ_G0013951	pseudogene	Chr7:126056091-126056504 (+)
BALB/cJ	MGP_BALBcJ_G0013974	pseudogene	Chr7:122624285-122624698 (+)
C3H/HeJ	MGP_C3HHeJ_G0013809	pseudogene	Chr7:125979322-125979735 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014406	pseudogene	Chr7:131179025-131179438 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012254	pseudogene	Chr7:124254711-124255125 (+)
CAST/EiJ	MGP_CASTEiJ_G0013465	pseudogene	Chr7:117761642-117762055 (+)
CBA/J	MGP_CBAJ_G0013789	pseudogene	Chr7:135583276-135583689 (+)
DBA/2J	MGP_DBA2J_G0013866	pseudogene	Chr7:120933955-120934368 (+)
FVB/NJ	MGP_FVBNJ_G0013867	pseudogene	Chr7:120785239-120785652 (+)
LP/J	MGP_LPJ_G0013945	pseudogene	Chr7:127643093-127643506 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013893	pseudogene	Chr7:136955902-136956315 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014372	pseudogene	Chr7:125064053-125064466 (+)
PWK/PhJ	MGP_PWKPhJ_G0013279	pseudogene	Chr7:113863432-113863845 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013047	pseudogene	Chr7:111834020-111834429 (+)
WSB/EiJ	MGP_WSBEiJ_G0013527	pseudogene	Chr7:125965903-125966316 (+)

Homology

• Gene Tree
  Gm16326
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089631 (Evidence)
• NCBI Gene
  118567503

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089631	Ensembl Gene Model | MGI Sequence Detail	414	C57BL/6J
transcript	ENSMUST00000162843	Ensembl | MGI Sequence Detail	414	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16326:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68859	Chr7:121730276-121730288 (+)	-33 bp