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Zbed6 Gene Detail
Summary
  • Symbol
    Zbed6
  • Name
    zinc finger, BED type containing 6
  • Synonyms
    Gm8466, MGR, similar to Zinc finger BED domain containing protein 4
  • Feature Type
    protein coding gene
  • IDs
    MGI:3828086
    NCBI Gene: 667118
  • Gene Overview
    MyGene.info: ZBED6
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:133655879-133660885 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 57.94 cM
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3828086
protein coding gene Chr1:133655879-133660885 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016491
protein coding gene Chr1:137255141-137260147 (-)
A/J MGP_AJ_G0016474
protein coding gene Chr1:132115043-132120049 (-)
AKR/J MGP_AKRJ_G0016439
protein coding gene Chr1:136048745-136053751 (-)
BALB/cJ MGP_BALBcJ_G0016434
protein coding gene Chr1:132449382-132454388 (-)
C3H/HeJ MGP_C3HHeJ_G0016260
protein coding gene Chr1:136145587-136150593 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016895
protein coding gene Chr1:142286988-142291994 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014606
protein coding gene Chr1:125265177-125270183 (-)
CAST/EiJ MGP_CASTEiJ_G0015840
protein coding gene Chr1:135184568-135189573 (-)
CBA/J MGP_CBAJ_G0016233
protein coding gene Chr1:147173709-147178715 (-)
DBA/2J MGP_DBA2J_G0016339
protein coding gene Chr1:131130759-131135765 (-)
FVB/NJ MGP_FVBNJ_G0016338
protein coding gene Chr1:129750712-129755718 (-)
LP/J MGP_LPJ_G0016410
protein coding gene Chr1:138538506-138543512 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016363
protein coding gene Chr1:152928213-152933219 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016931
protein coding gene Chr1:135765283-135770289 (-)
PWK/PhJ MGP_PWKPhJ_G0015626
protein coding gene Chr1:130131898-130136904 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015413
protein coding gene Chr1:134743144-134748140 (-)
WSB/EiJ MGP_WSBEiJ_G0015903
protein coding gene Chr1:135791675-135796681 (-)



Homology
more
  • Human Ortholog
    ZBED6, zinc finger BED-type containing 6
  • Vertebrate Orthologs
    6
  • Human Ortholog
    ZBED6, zinc finger BED-type containing 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MGR
  • Links
    NCBI Gene ID: 100381270
    neXtProt AC: NX_P86452
    UniProt: P86452

  • Chr Location
    1q32.1; chr1:203797523-203800462 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    6 phenotypes from multigenic genotypes
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele display sex specific increases in body, skeletal muscle, and organ sizes.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 667118 NCBI Gene Model | MGI Sequence Detail 5007 C57BL/6J ±  kb
    transcript NM_001166552 RefSeq | MGI Sequence Detail 5007 C57BL/6  
    polypeptide NP_001160024 RefSeq | MGI Sequence Detail 980 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 6
      Primer pair 1

      Microarray probesets 1
    References
    more
    • Summaries
      All 22
      Developmental Gene Expression 2
      Gene Ontology 3
      Phenotypes 5
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:265506 Younis S, et al., The ZBED6-IGF2 axis has a major effect on growth of skeletal muscle and internal organs in placental mammals. Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):E2048-E2057

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory