Gm13901 Pseudogene Detail

Summary

• Symbol
  Gm13901
• Name
  predicted gene 13901

• Feature Type
  pseudogene
• IDs
  MGI:3826588
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:106747116-106747583 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.94 cM

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826588	pseudogene	Chr2:106747116-106747583 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011808	pseudogene	Chr2:109148101-109148568 (+)
A/J	MGP_AJ_G0011799	pseudogene	Chr2:104596385-104596852 (+)
AKR/J	MGP_AKRJ_G0011767	pseudogene	Chr2:107460668-107461135 (+)
BALB/cJ	MGP_BALBcJ_G0011775	pseudogene	Chr2:104883418-104883885 (+)
C3H/HeJ	MGP_C3HHeJ_G0011663	pseudogene	Chr2:107788124-107788593 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012080	pseudogene	Chr2:112698224-112698691 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010573	pseudogene	Chr2:100374574-100375049 (+)
CAST/EiJ	MGP_CASTEiJ_G0011451	pseudogene	Chr2:108299819-108300288 (+)
CBA/J	MGP_CBAJ_G0011640	pseudogene	Chr2:116622519-116622986 (+)
DBA/2J	MGP_DBA2J_G0011691	pseudogene	Chr2:104147886-104148353 (+)
FVB/NJ	MGP_FVBNJ_G0011693	pseudogene	Chr2:103098131-103098598 (+)
LP/J	MGP_LPJ_G0011760	pseudogene	Chr2:109330137-109330604 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011698	pseudogene	Chr2:120422504-120422971 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012073	pseudogene	Chr2:107655462-107655929 (+)
PWK/PhJ	MGP_PWKPhJ_G0011301	pseudogene	Chr2:103694545-103695015 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011123	pseudogene	Chr2:106887112-106887585 (+)
WSB/EiJ	MGP_WSBEiJ_G0011476	pseudogene	Chr2:108387535-108388002 (+)

Homology

• Gene Tree
  Gm13901
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13901
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085530 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085530	Ensembl Gene Model | MGI Sequence Detail	468	C57BL/6J
transcript	ENSMUST00000137252	Ensembl | MGI Sequence Detail	468	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17