Gm16289 Pseudogene Detail

Summary

• Symbol
  Gm16289
• Name
  predicted gene 16289

• Feature Type
  pseudogene
• IDs
  MGI:3826551
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:51599132-51599314 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 26.49 cM

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826551	pseudogene	Chr14:51599132-51599314 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011103	pseudogene	Chr14:45332995-45333161 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011060	pseudogene	Chr14:45702772-45706934 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010977	pseudogene	Chr14:45496542-46025183 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011363	pseudogene	Chr14:47244704-47244886 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010672	pseudogene	Chr13:11802115-11802297 (-)
CBA/J	MGP_CBAJ_G0010949	pseudogene	Chr14:48642905-49246610 (-)
DBA/2J	MGP_DBA2J_G0010997	pseudogene	Chr14:43879971-44388685 (-)
FVB/NJ	MGP_FVBNJ_G0011003	pseudogene	Chr14:43507363-43510873 (-)
LP/J	MGP_LPJ_G0011081	pseudogene	Chr14:45848948-45849114 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010992	pseudogene	Chr14:48193943-48227512 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011343	pseudogene	Chr14:45134466-45134627 (-)
PWK/PhJ	MGP_PWKPhJ_G0010556	pseudogene	Chr13:11541547-11541729 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm16289
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16289
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000090228 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090228	Ensembl Gene Model | MGI Sequence Detail	183	C57BL/6J
transcript	ENSMUST00000162079	Ensembl | MGI Sequence Detail	183	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;