Rplp2-ps1 Pseudogene Detail

Summary

• Symbol
  Rplp2-ps1
• Name
  ribosomal protein, large P2, pseudogene 1
• Synonyms
  60S acidic ribosomal protein P2-like pseudogene, Gm7852, LOC665931

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3826366
  NCBI Gene: 665931
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:75677745-75678092 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 32.89 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3826366	pseudogene	Chr12:75677692-75678523 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  RPLP2, ribosomal protein lateral stalk subunit P2

• Vertebrate Orthologs
  6

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  RPLP2, ribosomal protein lateral stalk subunit P2
  
• Synonyms
  D11S2243E, LP2, P2, RPP2
• Links
  HGNC:10377

  NCBI Gene ID: 6181

  neXtProt AC: NX_P05387

  UniProt: P05387

  
  
• Chr Location
  11p15.5; chr11:809936-812876 (+)  GRCh38.p7

---

• Alliance of Genome Resources
  Rplp2-ps1 stringent orthology
  1 human;1 mouse;3 rat;2 zebrafish
  
• HCOP
  vertebrate homology predictions: RPLP2
• Gene Tree
  Rplp2-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rplp2-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000118552 (Evidence)
• NCBI Gene
  665931

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118552	Ensembl Gene Model | MGI Sequence Detail	348	C57BL/6J
transcript	ENSMUST00000238938	Ensembl | MGI Sequence Detail	348	Not Applicable
polypeptide	ENSMUSP00000158993	Ensembl | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR027534 Ribosomal protein L12/P1/P2 family
  IPR038716 Ribosomal protein P1/P2, N-terminal domain
  IPR044076 Ribosomal protein P2

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rplp2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116693	Chr12:75678145-75678154 (-)	-58 bp
Tssr116692	Chr12:75678101-75678134 (-)	-26 bp
Tssr116691	Chr12:75677974-75678002 (-)	104 bp