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Snord85 Gene Detail
Summary
  • Symbol
    Snord85
  • Name
    small nucleolar RNA, C/D box 85
  • Synonyms
    MBII-251, Z50
Location &
Maps
more
  • Sequence Map
    Chr4:130476949-130477013 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 63.50 cM
Strain
Comparison
more
  • SNPs within 2kb
    4 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819558
 snoRNA gene Chr4:130476945-130477017 (+)
129S1/SvImJ ENSMUSG00200021603
 snoRNA gene Chr4:123924921-123924993 (+)
A/J ENSMUSG00195043962
 snoRNA gene Chr4:125253446-125253518 (+)
AKR/J ENSMUSG00220048703
 snoRNA gene Chr4:124245218-124245290 (+)
BALB/cJ ENSMUSG00180050110
 snoRNA gene Chr4:122887084-122887156 (+)
C3H/HeJ ENSMUSG00175049431
 snoRNA gene Chr4:123899587-123899659 (+)
C57BL/6NJ ENSMUSG00215052718
 snoRNA gene Chr4:125403450-125403522 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036448
 snoRNA gene Chr4:120390903-120390975 (+)
CAST/EiJ ENSTCUG00005048769
 snoRNA gene Chr4:124784064-124784136 (+)
CBA/J ENSMUSG00210053949
 snoRNA gene Chr4:123528562-123528634 (+)
DBA/2J ENSMUSG00185053035
 snoRNA gene Chr4:125060956-125061028 (+)
FVB/NJ ENSMUSG00205048081
 snoRNA gene Chr4:123288045-123288117 (+)
JF1/MsJ ENSUMUG00000048576
 snoRNA gene Chr4:125723597-125723669 (+)
LP/J ENSMUSG00230038716
 snoRNA gene Chr4:128863590-128863662 (+)
NOD/ShiLtJ ENSMUSG00190048469
 snoRNA gene Chr4:123293367-123293439 (+)
NZO/HlLtJ ENSMUSG00225026648
 snoRNA gene Chr4:134771795-134771867 (+)
PWK/PhJ ENSLUMG00010050313
 snoRNA gene Chr4:122747136-122747208 (+)
SPRET/EiJ ENSMSPG00010045804
 snoRNA gene Chr4:124808285-124808359 (+)
WSB/EiJ ENSIUOG00005044267
 snoRNA gene Chr4:123153605-123153677 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217460 NCBI Gene Model | MGI Sequence Detail 65 C57BL/6J ±  kb
transcript NR_028565 RefSeq | MGI Sequence Detail 65 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 11
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:340213 Chanda K, et al., Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. RNA Biol. 2018;15(10):1348-1363
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/13/2026
MGI 6.29 		The Jackson Laboratory