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Snord55 Gene Detail
Summary
  • Symbol
    Snord55
  • Name
    small nucleolar RNA, C/D box 55
  • Synonyms
    U39, U55
Location &
Maps
more
  • Sequence Map
    Chr4:117012968-117013045 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 53.42 cM
Strain
Comparison
more
  • SNPs within 2kb
    108 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819543
 snoRNA gene Chr4:117012967-117013045 (-)
129S1/SvImJ ENSMUSG00200050538
 snoRNA gene Chr4:110909305-110909383 (-)
A/J ENSMUSG00195032468
 snoRNA gene Chr4:112176287-112176365 (-)
AKR/J ENSMUSG00220012496
 snoRNA gene Chr4:111523088-111523166 (-)
BALB/cJ ENSMUSG00180047105
 snoRNA gene Chr4:110243357-110243435 (-)
C3H/HeJ ENSMUSG00175043379
 snoRNA gene Chr4:111257725-111257803 (-)
C57BL/6NJ ENSMUSG00215040612
 snoRNA gene Chr4:112337223-112337301 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036440
 snoRNA gene Chr4:107608805-107608883 (-)
CAST/EiJ ENSTCUG00005023079
 snoRNA gene Chr4:111041532-111041610 (-)
CBA/J ENSMUSG00210053214
 snoRNA gene Chr4:110871432-110871510 (-)
DBA/2J ENSMUSG00185047493
 snoRNA gene Chr4:112401892-112401970 (-)
FVB/NJ ENSMUSG00205043029
 snoRNA gene Chr4:110340798-110340876 (-)
JF1/MsJ ENSUMUG00000026487
 snoRNA gene Chr4:112307985-112308063 (-)
LP/J ENSMUSG00230047505
 snoRNA gene Chr4:115726535-115726613 (-)
NOD/ShiLtJ ENSMUSG00190048764
 snoRNA gene Chr4:110239366-110239444 (-)
NZO/HlLtJ ENSMUSG00225011326
 snoRNA gene Chr4:121215004-121215082 (-)
PWK/PhJ ENSLUMG00010048657
 snoRNA gene Chr4:109706367-109706445 (-)
SPRET/EiJ ENSMSPG00010029483
 snoRNA gene Chr4:111805775-111805853 (-)
WSB/EiJ ENSIUOG00005044839
 snoRNA gene Chr4:110563987-110564065 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100216533 NCBI Gene Model | MGI Sequence Detail 78 C57BL/6J ±  kb
transcript NR_030704 RefSeq | MGI Sequence Detail 78 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory