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Snord53 Gene Detail
Summary
  • Symbol
    Snord53
  • Name
    small nucleolar RNA, C/D box 53
  • Synonyms
    MBII-35, U53
Location &
Maps
more
  • Sequence Map
    Chr17:71947884-71947951 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 41.87 cM
Strain
Comparison
more
  • SNPs within 2kb
    125 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819542
 snoRNA gene Chr17:71947874-71947951 (+)
129S1/SvImJ ENSMUSG00200039775
 snoRNA gene Chr17:67223833-67223910 (+)
A/J ENSMUSG00195019889
 snoRNA gene Chr17:68633399-68633476 (+)
AKR/J ENSMUSG00220019077
 snoRNA gene Chr17:67674054-67674131 (+)
BALB/cJ ENSMUSG00180022381
 snoRNA gene Chr17:68369572-68369649 (+)
C3H/HeJ ENSMUSG00175032037
 snoRNA gene Chr17:67624878-67624955 (+)
C57BL/6NJ ENSMUSG00215031774
 snoRNA gene Chr17:67364018-67364095 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0036165
 snoRNA gene Chr17:67606422-67606499 (+)
CAST/EiJ ENSTCUG00005027313
 snoRNA gene Chr17:68210767-68210844 (+)
CBA/J ENSMUSG00210030999
 snoRNA gene Chr17:67494717-67494794 (+)
DBA/2J ENSMUSG00185023693
 snoRNA gene Chr17:70327682-70327759 (+)
FVB/NJ ENSMUSG00205019599
 snoRNA gene Chr17:68139269-68139346 (+)
JF1/MsJ ENSUMUG00000041048
 snoRNA gene Chr17:69993258-69993335 (+)
LP/J ENSMUSG00230016909
 snoRNA gene Chr17:71283934-71284011 (+)
NOD/ShiLtJ ENSMUSG00190040806
 snoRNA gene Chr17:67374361-67374438 (+)
NZO/HlLtJ ENSMUSG00225029164
 snoRNA gene Chr17:73566609-73566686 (+)
PWK/PhJ ENSLUMG00010032055
 snoRNA gene Chr17:67217387-67217464 (+)
SPRET/EiJ ENSMSPG00010017609
 snoRNA gene Chr17:67564683-67564760 (+)
WSB/EiJ ENSIUOG00005034492
 snoRNA gene Chr17:68346221-68346298 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217456 NCBI Gene Model | MGI Sequence Detail 68 C57BL/6J ±  kb
transcript NR_028551 RefSeq | MGI Sequence Detail 68 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:340213 Chanda K, et al., Altered Levels of Long NcRNAs Meg3 and Neat1 in Cell And Animal Models Of Huntington's Disease. RNA Biol. 2018;15(10):1348-1363
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory