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Snord38a Gene Detail
Summary
  • Symbol
    Snord38a
  • Name
    small nucleolar RNA, C/D box 38A
  • Synonyms
    MBII-329, U38A
Location &
Maps
more
  • Sequence Map
    Chr4:117011713-117011771 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 53.41 cM
Strain
Comparison
more
  • SNPs within 2kb
    143 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819531
 snoRNA gene Chr4:117011711-117011781 (-)
129S1/SvImJ ENSMUSG00200050556
 snoRNA gene Chr4:110908049-110908119 (-)
A/J ENSMUSG00195032454
 snoRNA gene Chr4:112174917-112174987 (-)
AKR/J ENSMUSG00220012510
 snoRNA gene Chr4:111521832-111521902 (-)
BALB/cJ ENSMUSG00180047153
 snoRNA gene Chr4:110242101-110242171 (-)
C3H/HeJ ENSMUSG00175043494
 snoRNA gene Chr4:111256469-111256539 (-)
C57BL/6NJ ENSMUSG00215040646
 snoRNA gene Chr4:112335967-112336037 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036438
 snoRNA gene Chr4:107607441-107607511 (-)
CAST/EiJ ENSTCUG00005023093
 snoRNA gene Chr4:111040276-111040346 (-)
CBA/J ENSMUSG00210053220
 snoRNA gene Chr4:110870176-110870246 (-)
DBA/2J ENSMUSG00185047481
 snoRNA gene Chr4:112400522-112400592 (-)
FVB/NJ ENSMUSG00205043108
 snoRNA gene Chr4:110339542-110339612 (-)
JF1/MsJ ENSUMUG00000026538
 snoRNA gene Chr4:112306728-112306798 (-)
LP/J ENSMUSG00230047514
 snoRNA gene Chr4:115725279-115725349 (-)
NOD/ShiLtJ ENSMUSG00190048802
 snoRNA gene Chr4:110238110-110238180 (-)
NZO/HlLtJ ENSMUSG00225011345
 snoRNA gene Chr4:121213748-121213818 (-)
PWK/PhJ ENSLUMG00010048686
 snoRNA gene Chr4:109705110-109705180 (-)
SPRET/EiJ ENSMSPG00010029475
 snoRNA gene Chr4:111804520-111804590 (-)
WSB/EiJ ENSIUOG00005044814
 snoRNA gene Chr4:110562617-110562687 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217424 NCBI Gene Model | MGI Sequence Detail 59 C57BL/6J ±  kb
transcript NR_028524 RefSeq | MGI Sequence Detail 59 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 12
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/13/2026
MGI 6.29 		The Jackson Laboratory