Snord1a MGI Mouse Gene Detail - MGI:3819525 - small nucleolar RNA, C/D box 1A

Sequence Map

Chr11:116565424-116565497 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819525	snoRNA gene	Chr11:116565423-116565498 (+)
129S1/SvImJ	ENSMUSG00200052596	snoRNA gene	Chr11:113925275-113925348 (+)
A/J	ENSMUSG00195033251	snoRNA gene	Chr11:113633651-113633724 (+)
AKR/J	ENSMUSG00220031133	snoRNA gene	Chr11:113736361-113736434 (+)
BALB/cJ	ENSMUSG00180052749	snoRNA gene	Chr11:113926701-113926774 (+)
C3H/HeJ	ENSMUSG00175046454	snoRNA gene	Chr11:113885390-113885463 (+)
C57BL/6NJ	ENSMUSG00215046993	snoRNA gene	Chr11:113425655-113425728 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035898	snoRNA gene	Chr11:112542144-112542216 (+)
CAST/EiJ	ENSTCUG00005036581	snoRNA gene	Chr11:113284884-113284957 (+)
CBA/J	ENSMUSG00210050972	snoRNA gene	Chr11:113605368-113605441 (+)
DBA/2J	ENSMUSG00185027980	snoRNA gene	Chr11:113918138-113918211 (+)
FVB/NJ	ENSMUSG00205047533	snoRNA gene	Chr11:113731724-113731797 (+)
JF1/MsJ	ENSUMUG00000054790	snoRNA gene	Chr11:114187516-114187589 (+)
LP/J	ENSMUSG00230051370	snoRNA gene	Chr11:114978638-114978711 (+)
NOD/ShiLtJ	ENSMUSG00190049694	snoRNA gene	Chr11:113948874-113948947 (+)
NZO/HlLtJ	ENSMUSG00225053563	snoRNA gene	Chr11:117027228-117027301 (+)
PWK/PhJ	ENSLUMG00010024043	snoRNA gene	Chr11:113703668-113703741 (+)
SPRET/EiJ	ENSMSPG00010045572	snoRNA gene	Chr11:114230215-114230288 (+)
WSB/EiJ	ENSIUOG00005048029	snoRNA gene	Chr11:113690706-113690779 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000065094	Ensembl Gene Model \| MGI Sequence Detail	74	C57BL/6J	± kb
	transcript	ENSMUST00000083160	Ensembl \| MGI Sequence Detail	74	Not Applicable

Summaries

All 8

Gene Ontology 1
Earliest

J:88969 Zhou H, et al., Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. Gene. 2004 Feb 18;327(1):99-105

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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