Snord1a MGI Mouse Gene Detail - MGI:3819525 - small nucleolar RNA, C/D box 1A

Sequence Map

Chr11:116565424-116565497 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819525	snoRNA gene	Chr11:116565423-116565498 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038611	snoRNA gene	Chr11:120820976-120821049 (+)
A/J	MGP_AJ_G0038602	snoRNA gene	Chr11:115529953-115530026 (+)
AKR/J	MGP_AKRJ_G0038538	snoRNA gene	Chr11:118972727-118972800 (+)
BALB/cJ	MGP_BALBcJ_G0038587	snoRNA gene	Chr11:115926075-115926148 (+)
C3H/HeJ	MGP_C3HHeJ_G0038250	snoRNA gene	Chr11:119328997-119329070 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039135	snoRNA gene	Chr11:124518204-124518277 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0035898	snoRNA gene	Chr11:112542144-112542216 (+)
CAST/EiJ	MGP_CASTEiJ_G0037396	snoRNA gene	Chr11:120702417-120702490 (+)
CBA/J	MGP_CBAJ_G0038222	snoRNA gene	Chr11:129432499-129432572 (+)
DBA/2J	MGP_DBA2J_G0038412	snoRNA gene	Chr11:114955320-114955393 (+)
FVB/NJ	MGP_FVBNJ_G0038363	snoRNA gene	Chr11:114468672-114468745 (+)
LP/J	MGP_LPJ_G0038451	snoRNA gene	Chr11:121204775-121204848 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038363	snoRNA gene	Chr11:128464326-128464399 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039235	snoRNA gene	Chr11:119629445-119629518 (+)
PWK/PhJ	MGP_PWKPhJ_G0037080	snoRNA gene	Chr11:116283811-116283884 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0036837	snoRNA gene	Chr11:119380315-119380388 (+)
WSB/EiJ	MGP_WSBEiJ_G0037625	snoRNA gene	Chr11:119598528-119598601 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000065094	Ensembl Gene Model \| MGI Sequence Detail	74	C57BL/6J	± kb
	transcript	ENSMUST00000083160	Ensembl \| MGI Sequence Detail	74	Not Applicable

Summaries

All 6
Earliest

J:88969 Zhou H, et al., Identification of a novel box C/D snoRNA from mouse nucleolar cDNA library. Gene. 2004 Feb 18;327(1):99-105

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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