Snord16a Gene Detail

Summary

• Symbol
  Snord16a
• Name
  small nucleolar RNA, C/D box 16A
• Synonyms
  MBII-98, U16

• Feature Type
  snoRNA gene
• IDs
  MGI:3819522
  NCBI Gene: 100217453
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:64082714-64082804 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 34.54 cM

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819522	snoRNA gene	Chr9:64082705-64082804 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Snord16a
  

Gene Ontology
(GO)
Classifications

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000119388 (Evidence)
• NCBI Gene
  100217453

Representative Sequences			Length	Strain/Species
genomic	100217453	NCBI Gene Model | MGI Sequence Detail	91	C57BL/6J
transcript	NR_028548	RefSeq | MGI Sequence Detail	91	Not Specified

References

• Summaries
  All 6
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53

TSS for Snord16a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85598	Chr9:64082704-64082708 (+)	-8 bp