Snora61 Gene Detail

Summary

• Symbol
  Snora61
• Name
  small nucleolar RNA, H/ACA box 61
• Synonyms
  MBI-164

• Feature Type
  snoRNA gene
• IDs
  MGI:3819510
  NCBI Gene: 100217440
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:132037618-132037679 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 65.16 cM

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819510	snoRNA gene	Chr4:132037551-132037680 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039232	snoRNA gene	Chr4:134450073-134450202 (+)
A/J	MGP_AJ_G0039228	snoRNA gene	Chr4:128866138-128866267 (+)
AKR/J	MGP_AKRJ_G0039158	snoRNA gene	Chr4:132485279-132485408 (+)
BALB/cJ	MGP_BALBcJ_G0039211	snoRNA gene	Chr4:129476066-129476195 (+)
C3H/HeJ	MGP_C3HHeJ_G0038872	snoRNA gene	Chr4:132742093-132742222 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039759	snoRNA gene	Chr4:139305106-139305235 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036456	snoRNA gene	Chr4:121943120-121943253 (+)
CAST/EiJ	MGP_CASTEiJ_G0038005	snoRNA gene	Chr4:130817566-130817695 (+)
CBA/J	MGP_CBAJ_G0038843	snoRNA gene	Chr4:142877780-142877909 (+)
DBA/2J	MGP_DBA2J_G0039028	snoRNA gene	Chr4:129289325-129289454 (+)
FVB/NJ	MGP_FVBNJ_G0038983	snoRNA gene	Chr4:128137135-128137264 (+)
LP/J	MGP_LPJ_G0039072	snoRNA gene	Chr4:134607576-134607705 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038984	snoRNA gene	Chr4:147468643-147468783 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0039858	snoRNA gene	Chr4:132890043-132890172 (+)
PWK/PhJ	MGP_PWKPhJ_G0037691	snoRNA gene	Chr4:125968319-125968546 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037439	snoRNA gene	Chr4:128761438-128761567 (+)
WSB/EiJ	MGP_WSBEiJ_G0038234	snoRNA gene	Chr4:133074802-133074931 (+)

Homology

• Gene Tree
  Snora61
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snora61
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000064949 (Evidence)
• NCBI Gene
  100217440

Representative Sequences			Length	Strain/Species
genomic	100217440	NCBI Gene Model | MGI Sequence Detail	62	C57BL/6J
transcript	NR_034046	RefSeq | MGI Sequence Detail	62	Not Specified

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for Snora61:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39368	Chr4:132037439-132037485 (+)	-156 bp