About   Help   FAQ
Scarna9 Gene Detail
Summary
  • Symbol
    Scarna9
  • Name
    small Cajal body-specific RNA 9
  • Synonyms
    mgU2-19/30, Z32
Location &
Maps
more
  • Sequence Map
    Chr9:15237585-15237626 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 4.80 cM
Strain
Comparison
more
  • SNPs within 2kb
    67 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819489
 snoRNA gene Chr9:15237560-15237629 (-)
129S1/SvImJ ENSMUSG00200050071
 snoRNA gene Chr9:12139419-12139488 (-)
A/J ENSMUSG00195039504
 snoRNA gene Chr9:12024709-12024778 (-)
AKR/J ENSMUSG00220035585
 snoRNA gene Chr9:12002472-12002541 (-)
BALB/cJ ENSMUSG00180042824
 snoRNA gene Chr9:12149045-12149114 (-)
C3H/HeJ ENSMUSG00175045560
 snoRNA gene Chr9:12095911-12095980 (-)
C57BL/6NJ ENSMUSG00215038983
 snoRNA gene Chr9:12090523-12090592 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0036686
 snoRNA gene Chr9:11513488-11513557 (-)
CAST/EiJ ENSTCUG00005035767
 snoRNA gene Chr9:12132062-12132131 (-)
CBA/J ENSMUSG00210045112
 snoRNA gene Chr9:12127094-12127163 (-)
DBA/2J ENSMUSG00185026656
 snoRNA gene Chr9:12215613-12215682 (-)
FVB/NJ ENSMUSG00205043151
 snoRNA gene Chr9:12199644-12199713 (-)
JF1/MsJ ENSUMUG00000049834
 snoRNA gene Chr9:12218798-12218867 (-)
LP/J ENSMUSG00230044017
 snoRNA gene Chr9:12637480-12637549 (-)
NOD/ShiLtJ ENSMUSG00190040421
 snoRNA gene Chr9:12126082-12126151 (-)
NZO/HlLtJ ENSMUSG00225050979
 snoRNA gene Chr9:12535053-12535122 (-)
PWK/PhJ ENSLUMG00010047151
 snoRNA gene Chr9:12152122-12152191 (-)
SPRET/EiJ ENSMSPG00010025861
 snoRNA gene Chr9:12336899-12336968 (-)
WSB/EiJ ENSIUOG00005045367
 snoRNA gene Chr9:11802675-11802744 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100216535 NCBI Gene Model | MGI Sequence Detail 42 C57BL/6J ±  kb
transcript NR_028568 RefSeq | MGI Sequence Detail 42 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 7
    Gene Ontology 1
  • Earliest
    J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
  • Latest
    J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory