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Scarna8 Gene Detail
Summary
  • Symbol
    Scarna8
  • Name
    small Cajal body-specific RNA 8
  • Synonyms
    MBI-57, U92
Location &
Maps
more
  • Sequence Map
    Chr4:86504690-86504807 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 40.69 cM
Strain
Comparison
more
  • SNPs within 2kb
    112 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819488
 snoRNA gene Chr4:86504690-86504820 (-)
129S1/SvImJ ENSMUSG00200001004
 snoRNA gene Chr4:81453740-81453870 (-)
A/J ENSMUSG00195009435
 snoRNA gene Chr4:82033049-82033179 (-)
AKR/J ENSMUSG00220008128
 snoRNA gene Chr4:81425980-81426110 (-)
BALB/cJ ENSMUSG00180008429
 snoRNA gene Chr4:80997967-80998097 (-)
C3H/HeJ ENSMUSG00175004167
 snoRNA gene Chr4:81920408-81920538 (-)
C57BL/6NJ ENSMUSG00215020396
 snoRNA gene Chr4:81877091-81877221 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0034393
 snoRNA gene Chr4:79435043-79435173 (-)
CAST/EiJ ENSTCUG00005000955
 snoRNA gene Chr4:81323432-81323562 (-)
CBA/J ENSMUSG00210001351
 snoRNA gene Chr4:81507132-81507262 (-)
DBA/2J ENSMUSG00185003118
 snoRNA gene Chr4:82114760-82114890 (-)
FVB/NJ ENSMUSG00205001462
 snoRNA gene Chr4:80394005-80394135 (-)
JF1/MsJ ENSUMUG00000003444
 snoRNA gene Chr4:82380956-82381086 (-)
LP/J ENSMUSG00230018653
 snoRNA gene Chr4:85535033-85535163 (-)
NOD/ShiLtJ ENSMUSG00190000941
 snoRNA gene Chr4:80955615-80955745 (-)
NZO/HlLtJ ENSMUSG00225005716
 snoRNA gene Chr4:90623919-90624049 (-)
PWK/PhJ ENSLUMG00010001704
 snoRNA gene Chr4:80221523-80221653 (-)
SPRET/EiJ ENSMSPG00010015931
 snoRNA gene Chr4:81969277-81969407 (-)
WSB/EiJ ENSIUOG00005009992
 snoRNA gene Chr4:81318936-81319066 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217448 NCBI Gene Model | MGI Sequence Detail 118 C57BL/6J ±  kb
transcript NR_028545 RefSeq | MGI Sequence Detail 118 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 10
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory