Scarna3a Gene Detail

Summary

• Symbol
  Scarna3a
• Name
  small Cajal body-specific RNA 3A
• Synonyms
  MBI-114

• Feature Type
  snoRNA gene
• IDs
  MGI:3819485
  NCBI Gene: 100217414
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:159167877-159167994 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 69.03 cM

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819485	snoRNA gene	Chr1:159167853-159167994 (+)
129S1/SvImJ	ENSMUSG00200008006	snoRNA gene	Chr1:156643597-156643736 (+)
A/J	ENSMUSG00195023167	snoRNA gene	Chr1:155992569-155992708 (+)
AKR/J	ENSMUSG00220014755	snoRNA gene	Chr1:155778073-155778212 (+)
BALB/cJ	ENSMUSG00180038721	snoRNA gene	Chr1:156222950-156223089 (+)
C3H/HeJ	ENSMUSG00175047586	snoRNA gene	Chr1:156277732-156277871 (+)
C57BL/6NJ	ENSMUSG00215041231	snoRNA gene	Chr1:156165474-156165613 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021652	snoRNA gene	Chr1:154814286-154814425 (+)
CBA/J	ENSMUSG00210021570	snoRNA gene	Chr1:156168747-156168886 (+)
DBA/2J	ENSMUSG00185048208	snoRNA gene	Chr1:160444075-160444214 (+)
FVB/NJ	ENSMUSG00205010133	snoRNA gene	Chr1:155293788-155293927 (+)
JF1/MsJ	ENSUMUG00000037339	snoRNA gene	Chr1:159598926-159599065 (+)
LP/J	ENSMUSG00230017299	snoRNA gene	Chr1:160043600-160043739 (+)
NOD/ShiLtJ	ENSMUSG00190044292	snoRNA gene	Chr1:156018171-156018310 (+)
NZO/HlLtJ	ENSMUSG00225005100	snoRNA gene	Chr1:163654585-163654724 (+)
PWK/PhJ	ENSLUMG00010045948	snoRNA gene	Chr1:154981673-154981812 (+)
SPRET/EiJ	ENSMSPG00010043432	snoRNA gene	Chr1:158358172-158358311 (+)
WSB/EiJ	ENSIUOG00005016305	snoRNA gene	Chr1:155605927-155606066 (+)

Homology

• Gene Tree
  Scarna3a
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  1

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00002074853 (Evidence)
• NCBI Gene
  100217414

Representative Sequences			Length	Strain/Species
genomic	100217414	NCBI Gene Model | MGI Sequence Detail	118	C57BL/6J
transcript	NR_028518	RefSeq | MGI Sequence Detail	118	Not Specified

References

• Summaries
  All 8

  Gene Ontology 1
• Earliest
  J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
• Latest
  J:69869 Baran V, et al., Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Mol Reprod Dev. 2001 Jul;59(3):277-84