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Scarna2 Gene Detail
Summary
  • Symbol
    Scarna2
  • Name
    small Cajal body-specific RNA 2
  • Synonyms
    MBII-382, mgU2-25/61
Location &
Maps
more
  • Sequence Map
    Chr3:108461658-108461718 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 47.31 cM
Strain
Comparison
more
  • SNPs within 2kb
    72 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819484
 snoRNA gene Chr3:108461654-108462067 (-)
129S1/SvImJ ENSMUSG00200035687
 snoRNA gene Chr3:105077864-105078277 (-)
A/J ENSMUSG00195026546
 snoRNA gene Chr3:105504340-105504753 (-)
AKR/J ENSMUSG00220032653
 snoRNA gene Chr3:103867962-103868375 (-)
BALB/cJ ENSMUSG00180020032
 snoRNA gene Chr3:105450453-105450866 (-)
C3H/HeJ ENSMUSG00175029884
 snoRNA gene Chr3:104984406-104984819 (-)
C57BL/6NJ ENSMUSG00215033503
 snoRNA gene Chr3:105712319-105712732 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0034392
 snoRNA gene Chr3:102756153-102756567 (-)
CAST/EiJ ENSTCUG00005026779
 snoRNA gene Chr3:105986527-105986940 (-)
CBA/J ENSMUSG00210008547
 snoRNA gene Chr3:105606294-105606707 (-)
DBA/2J ENSMUSG00185022491
 snoRNA gene Chr3:106075610-106076023 (-)
FVB/NJ ENSMUSG00205029496
 snoRNA gene Chr3:104642330-104642743 (-)
JF1/MsJ ENSUMUG00000005461
 snoRNA gene Chr3:105053797-105054210 (-)
LP/J ENSMUSG00230021436
 snoRNA gene Chr3:107990847-107991260 (-)
NOD/ShiLtJ ENSMUSG00190036923
 snoRNA gene Chr3:106313728-106314141 (-)
NZO/HlLtJ ENSMUSG00225021596
 snoRNA gene Chr3:110499452-110499865 (-)
PWK/PhJ ENSLUMG00010024583
 snoRNA gene Chr3:104910101-104910514 (-)
SPRET/EiJ ENSMSPG00010036378
 snoRNA gene Chr3:105413966-105414379 (-)
WSB/EiJ ENSIUOG00005004775
 snoRNA gene Chr3:105628793-105629206 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217438 NCBI Gene Model | MGI Sequence Detail 61 C57BL/6J ±  kb
transcript NR_028538 RefSeq | MGI Sequence Detail 61 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:69869 Baran V, et al., Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Mol Reprod Dev. 2001 Jul;59(3):277-84
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/13/2026
MGI 6.29 		The Jackson Laboratory