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Scarna10 Gene Detail
Summary
  • Symbol
    Scarna10
  • Name
    small Cajal body-specific RNA 10
  • Synonyms
    MBI-52, U85
Location &
Maps
more
  • Sequence Map
    Chr6:125163324-125163394 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 59.32 cM
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3819482
 snoRNA gene Chr6:125163322-125163646 (-)
129S1/SvImJ ENSMUSG00200051200
 snoRNA gene Chr6:122224704-122225028 (-)
A/J ENSMUSG00195048916
 snoRNA gene Chr6:121671342-121671666 (-)
AKR/J ENSMUSG00220035424
 snoRNA gene Chr6:120532940-120533264 (-)
BALB/cJ ENSMUSG00180050870
 snoRNA gene Chr6:122010009-122010333 (-)
C3H/HeJ ENSMUSG00175038966
 snoRNA gene Chr6:121671798-121672122 (-)
C57BL/6NJ ENSMUSG00215049137
 snoRNA gene Chr6:121988477-121988801 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005051472
 snoRNA gene Chr6:121854491-121854815 (-)
CBA/J ENSMUSG00210046311
 snoRNA gene Chr6:121710398-121710722 (-)
DBA/2J ENSMUSG00185046931
 snoRNA gene Chr6:122410001-122410325 (-)
FVB/NJ ENSMUSG00205052245
 snoRNA gene Chr6:121124795-121125119 (-)
JF1/MsJ ENSUMUG00000054621
 snoRNA gene Chr6:120818207-120818531 (-)
LP/J ENSMUSG00230044084
 snoRNA gene Chr6:123606881-123607205 (-)
NOD/ShiLtJ ENSMUSG00190051689
 snoRNA gene Chr6:121381588-121381912 (-)
NZO/HlLtJ ENSMUSG00225018039
 snoRNA gene Chr6:125636683-125637007 (-)
PWK/PhJ ENSLUMG00010050010
 snoRNA gene Chr6:120084374-120084698 (-)
SPRET/EiJ ENSMSPG00010044433
 snoRNA gene Chr6:122938147-122938471 (-)
WSB/EiJ ENSIUOG00005047105
 snoRNA gene Chr6:122095096-122095420 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100217413 NCBI Gene Model | MGI Sequence Detail 71 C57BL/6J ±  kb
transcript NR_028517 RefSeq | MGI Sequence Detail 71 Not Specified  
For the selected sequence
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:69860 Huttenhofer A, et al., RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 2001 Jun 1;20(11):2943-53
  • Latest
    J:69869 Baran V, et al., Nopp 140 involvement in nucleologenesis of mouse preimplantation embryos. Mol Reprod Dev. 2001 Jul;59(3):277-84
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/06/2026
MGI 6.29 		The Jackson Laboratory