Gm9696 Pseudogene Detail

Summary

• Symbol
  Gm9696
• Name
  predicted gene 9696

• Feature Type
  pseudogene
• IDs
  MGI:3819177
  NCBI Gene: 676914
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:59866781-59879903 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 29.13 cM

Strain
Comparison

• SNPs within 2kb
  472 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3819177	pseudogene	Chr3:59859730-59881015 (+)
129S1/SvImJ	ENSMUSG00200023797	pseudogene	Chr3:56730322-56751620 (+)
A/J	ENSMUSG00195032665	pseudogene	Chr3:56658360-56679648 (+)
AKR/J	ENSMUSG00220030878	pseudogene	Chr3:56458198-56479520 (-)
BALB/cJ	ENSMUSG00180027743	pseudogene	Chr3:56725396-56746700 (+)
C3H/HeJ	ENSMUSG00175008899	pseudogene	Chr3:56571977-56593275 (+)
C57BL/6NJ	ENSMUSG00215009332	pseudogene	Chr3:57041486-57062774 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036967	pseudogene	Chr3:53266712-53276880 (+)
CAST/EiJ	ENSTCUG00005002513	pseudogene	Chr3:56331263-56352581 (+)
CBA/J	ENSMUSG00210003945	pseudogene	Chr3:56682359-56703660 (+)
DBA/2J	ENSMUSG00185028568	pseudogene	Chr3:56865000-56886290 (+)
FVB/NJ	ENSMUSG00205004075	pseudogene	Chr3:55845170-55866498 (+)
JF1/MsJ	ENSUMUG00000003855	pseudogene	Chr3:56576983-56598318 (+)
JF1/MsJ	ENSUMUG00000003829	pseudogene	Chr3:56258854-56280189 (+)
LP/J	ENSMUSG00230004683	pseudogene	Chr3:58862312-58883606 (+)
NOD/ShiLtJ	ENSMUSG00190033332	pseudogene	Chr3:57059278-57080574 (+)
NZO/HlLtJ	ENSMUSG00225002266	pseudogene	Chr3:61487531-61508820 (+)
PWK/PhJ	ENSLUMG00010005524	pseudogene	Chr3:56396631-56418003 (+)
SPRET/EiJ	ENSMSPG00010007738	pseudogene	Chr3:57149650-57176154 (+)
WSB/EiJ	ENSIUOG00005009303	pseudogene	Chr3:56823763-56845048 (+)

Homology

• Gene Tree
  Gm9696
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm9696
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000070465 (Evidence)
• NCBI Gene
  676914

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070465	Ensembl Gene Model | MGI Sequence Detail	13123	C57BL/6J
transcript	ENSMUST00000191541	Ensembl | MGI Sequence Detail	830	Not Applicable
polypeptide	Q3US01	UniProt | EBI | MGI Sequence Detail	216	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR029058 Alpha/Beta hydrolase fold
  IPR013094 Alpha/beta hydrolase fold-3

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426