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Trav5-1 Gene Detail
Summary
  • Symbol
    Trav5-1
  • Name
    T cell receptor alpha variable 5-1
  • Synonyms
    Gm7124, Trav5-1 T-cell receptor alpha chain V region 5-1
  • Feature Type
    gene segment
  • IDs
    MGI:3815062
    NCBI Gene: 633740
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:52622566-52623082 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.02 cM
Strain
Comparison
more
  • SNPs within 2kb
    72 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3815062
gene segment Chr14:52622566-52623082 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002520
gene segment Chr14:46687584-46688100 (+)
A/J MGP_AJ_G0002492
gene segment Chr14:45467787-45468303 (+)
AKR/J MGP_AKRJ_G0002479
gene segment Chr14:47112656-47113172 (+)
BALB/cJ MGP_BALBcJ_G0002488
gene segment Chr14:45571834-45572350 (+)
C3H/HeJ MGP_C3HHeJ_G0002464
gene segment Chr14:46870983-46871499 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002613
gene segment Chr14:48746097-48746613 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002218
gene segment Chr14:44571781-44572292 (+)
CAST/EiJ MGP_CASTEiJ_G0002424
gene segment Chr14:43839091-43839607 (+)
CBA/J MGP_CBAJ_G0002455
gene segment Chr14:50248918-50249434 (+)
DBA/2J MGP_DBA2J_G0002461
gene segment Chr14:45228171-45228687 (+)
FVB/NJ MGP_FVBNJ_G0002475
gene segment Chr14:44802610-44803126 (+)
LP/J MGP_LPJ_G0002516
gene segment Chr14:47313684-47314200 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002445
gene segment Chr14:49666754-49667270 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002609
gene segment Chr14:46453531-46454047 (+)
PWK/PhJ MGP_PWKPhJ_G0002406
gene segment Chr14:41981131-41981647 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002339
gene segment Chr14:42497572-42498088 (+)
WSB/EiJ MGP_WSBEiJ_G0002455
gene segment Chr14:46776701-46777217 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 633740 NCBI Gene Model | MGI Sequence Detail 517 C57BL/6J ±  kb
polypeptide A0A075B5Z7 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 7
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/04/2020
MGI 6.14
The Jackson Laboratory