Kdg4-ps1 Pseudogene Detail

Summary

• Symbol
  Kdg4-ps1
• Name
  alpha-ketoglutarate dehydrogenase subunit 4, pseudogene 1
• Synonyms
  Gm4676, Mrps36-ps1

• Feature Type
  pseudogene
• IDs
  MGI:3809201
  NCBI Gene: 100043826
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:54173743-54174048 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 28.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3809201	pseudogene	Chr17:54173439-54174068 (-)
129S1/SvImJ	ENSMUSG00200028753	pseudogene	Chr17:49388137-49388442 (-)
A/J	ENSMUSG00195007213	pseudogene	Chr17:50840452-50840757 (-)
AKR/J	ENSMUSG00220038028	pseudogene	Chr17:49848077-49848382 (-)
BALB/cJ	ENSMUSG00180006632	pseudogene	Chr17:50596610-50596915 (-)
C3H/HeJ	ENSMUSG00175016776	pseudogene	Chr17:49903761-49904066 (-)
C57BL/6NJ	ENSMUSG00215036484	pseudogene	Chr17:49504779-49505084 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019584	pseudogene	Chr17:50724879-50725184 (-)
CAST/EiJ	ENSTCUG00005047516	pseudogene	Chr1:166807151-166807456 (-)
CBA/J	ENSMUSG00210039600	pseudogene	Chr17:49653287-49653592 (-)
DBA/2J	ENSMUSG00185009553	pseudogene	Chr17:52553851-52554156 (-)
FVB/NJ	ENSMUSG00205053081	pseudogene	Chr17:50219469-50219774 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230029099	pseudogene	Chr17:53500696-53501001 (-)
NOD/ShiLtJ	ENSMUSG00190018604	pseudogene	Chr17:49631033-49631338 (-)
NZO/HlLtJ	ENSMUSG00225043804	pseudogene	Chr17:55774852-55775157 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005024842	pseudogene	Chr17:50583014-50583319 (-)

Homology

• Gene Tree
  Kdg4-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas
• Other Vertebrate Links
  GEISHA MRPS36

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000021631 (Evidence)
• NCBI Gene
  100043826

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000021631	Ensembl Gene Model | MGI Sequence Detail	306	C57BL/6J
transcript	ENSMUST00000061311	Ensembl | MGI Sequence Detail	306	Not Applicable

Other
Accession IDs

MGI:3809883, MGI:8330113

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;