Gm2423 Pseudogene Detail

Summary

• Symbol
  Gm2423
• Name
  predicted gene 2423

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3805957
  NCBI Gene: 100039786
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:13406746-13407478 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 5.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3805957	pseudogene	Chr13:13406078-13407553 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013225	pseudogene	Chr5:112973759-112974378 (-)
AKR/J	MGP_AKRJ_G0013191	pseudogene	Chr5:116559242-116559861 (-)
BALB/cJ	MGP_BALBcJ_G0013206	pseudogene	Chr5:114346327-114346946 (-)
C3H/HeJ	MGP_C3HHeJ_G0013054	pseudogene	Chr5:117082619-117083238 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013573	pseudogene	Chr5:122161462-122162068 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013024	pseudogene	Chr5:126806076-126806695 (-)
DBA/2J	MGP_DBA2J_G0013105	pseudogene	Chr5:113047136-113047755 (-)
FVB/NJ	MGP_FVBNJ_G0013105	pseudogene	Chr5:111858084-111858703 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013125	pseudogene	Chr5:131184896-131185515 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013574	pseudogene	Chr5:116028128-116028747 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011785	pseudogene	Chr3:45999091-45999752 (-)

Homology

• Gene Tree
  Gm2423
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000061724 (Evidence)
• NCBI Gene
  100039786

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000061724	Ensembl Gene Model | MGI Sequence Detail	733	C57BL/6J
transcript	ENSMUST00000074863	Ensembl | MGI Sequence Detail	733	Not Applicable
polypeptide	XP_036014168	RefSeq | MGI Sequence Detail	245	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2423:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121472	Chr13:13407547-13407555 (-)	-73 bp