Gm16184 Pseudogene Detail

Summary

• Symbol
  Gm16184
• Name
  predicted gene 16184

• Feature Type
  pseudogene
• IDs
  MGI:3802154
  NCBI Gene: 100416336
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:19645750-19646322 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 9.95 cM

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802154	pseudogene	Chr7:19645731-19646336 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013832	pseudogene	Chr7:17967016-17967588 (+)
A/J	MGP_AJ_G0013831	pseudogene	Chr7:17567005-17567577 (+)
AKR/J	MGP_AKRJ_G0013779	pseudogene	Chr7:18059253-18059825 (+)
BALB/cJ	MGP_BALBcJ_G0013814	pseudogene	Chr7:17773477-17774049 (+)
C3H/HeJ	MGP_C3HHeJ_G0013636	pseudogene	Chr7:18322883-18323455 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014209	pseudogene	Chr7:18862805-18863377 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012122	pseudogene	Chr7:19205496-19206083 (+)
CAST/EiJ	MGP_CASTEiJ_G0013312	pseudogene	Chr7:14782234-14782806 (+)
CBA/J	MGP_CBAJ_G0013617	pseudogene	Chr7:19553902-19554474 (+)
DBA/2J	MGP_DBA2J_G0013694	pseudogene	Chr7:17515646-17516218 (+)
FVB/NJ	MGP_FVBNJ_G0013690	pseudogene	Chr7:17399689-17400261 (+)
LP/J	MGP_LPJ_G0013774	pseudogene	Chr7:18283947-18284519 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013709	pseudogene	Chr7:19363712-19364284 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014187	pseudogene	Chr7:17680226-17680798 (+)
PWK/PhJ	MGP_PWKPhJ_G0013124	pseudogene	Chr7:14624678-14625250 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012903	pseudogene	Chr7:12394254-12394839 (+)
WSB/EiJ	MGP_WSBEiJ_G0013373	pseudogene	Chr7:17898313-17898885 (+)

Homology

• Gene Tree
  Gm16184
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089886 (Evidence)
• NCBI Gene
  100416336

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089886	Ensembl Gene Model | MGI Sequence Detail	573	C57BL/6J
transcript	ENSMUST00000162324	Ensembl | MGI Sequence Detail	573	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm16184:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64917	Chr7:19645727-19645730 (+)	-21 bp