Gm16238 Pseudogene Detail

Summary

• Symbol
  Gm16238
• Name
  predicted gene 16238

• Feature Type
  pseudogene
• IDs
  MGI:3802104
  NCBI Gene: 100191076
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:127485584-127486169 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 56.54 cM

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802104	pseudogene	Chr3:127485505-127486195 (-)
129S1/SvImJ	ENSMUSG00200003794	pseudogene	Chr3:124229532-124230120 (-)
A/J	ENSMUSG00195008884	pseudogene	Chr3:124368271-124368859 (-)
AKR/J	ENSMUSG00220022684	pseudogene	Chr3:122800211-122800796 (-)
BALB/cJ	ENSMUSG00180003808	pseudogene	Chr3:124295416-124296004 (-)
C3H/HeJ	ENSMUSG00175014596	pseudogene	Chr3:123849087-123849675 (-)
C57BL/6NJ	ENSMUSG00215024106	pseudogene	Chr3:124631111-124631697 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012503	pseudogene	ChrX:265808-266393 (+)
CAST/EiJ	ENSTCUG00005003969	pseudogene	Chr3:124935743-124936331 (-)
CBA/J	ENSMUSG00210004311	pseudogene	Chr3:124472288-124472876 (-)
DBA/2J	ENSMUSG00185027272	pseudogene	Chr3:125084000-125084585 (-)
FVB/NJ	ENSMUSG00205029221	pseudogene	Chr3:123429115-123429700 (-)
JF1/MsJ	ENSUMUG00000030195	pseudogene	Chr3:123840620-123841208 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001570	pseudogene	Chr3:125479315-125479900 (-)
NZO/HlLtJ	ENSMUSG00225004064	pseudogene	Chr3:129518682-129519267 (-)
PWK/PhJ	ENSLUMG00010015533	pseudogene	Chr3:123861946-123862534 (-)
SPRET/EiJ	ENSMSPG00010013953	pseudogene	Chr3:124779300-124779884 (-)
WSB/EiJ	ENSIUOG00005017074	pseudogene	Chr3:124648702-124649287 (-)

Homology

• Gene Tree
  Gm16238
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16238
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089988 (Evidence)
• NCBI Gene
  100191076

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089988	Ensembl Gene Model | MGI Sequence Detail	586	C57BL/6J
transcript	ENSMUST00000159343	Ensembl | MGI Sequence Detail	586	Not Applicable

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm16238:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35589	Chr3:127486195-127486197 (-)	-27 bp