Gm15873 Gene Detail

Summary

• Symbol
  Gm15873
• Name
  predicted gene 15873

• Feature Type
  lncRNA gene
• IDs
  MGI:3802055
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:4529535-4533574 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 2.62 cM

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802055	lncRNA gene	Chr7:4529535-4533574 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004406	antisense lncRNA gene	Chr7:1446913-1450950 (+)
A/J	MGP_AJ_G0004383	antisense lncRNA gene	Chr7:1446293-1450330 (+)
AKR/J	MGP_AKRJ_G0004365	antisense lncRNA gene	Chr7:1523804-1527841 (+)
BALB/cJ	MGP_BALBcJ_G0004369	antisense lncRNA gene	Chr7:1512297-1516350 (+)
C3H/HeJ	MGP_C3HHeJ_G0004318	antisense lncRNA gene	Chr7:1485704-1489739 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004518	antisense lncRNA gene	Chr7:1480156-1484163 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003978	antisense lncRNA gene	Chr7:1215274-1216943 (+)
CAST/EiJ	MGP_CASTEiJ_G0004278	antisense lncRNA gene	Chr7:1427671-1431731 (+)
CBA/J	MGP_CBAJ_G0004312	antisense lncRNA gene	Chr7:1678086-1682121 (+)
DBA/2J	MGP_DBA2J_G0004327	antisense lncRNA gene	Chr7:1409207-1413242 (+)
FVB/NJ	MGP_FVBNJ_G0004345	antisense lncRNA gene	Chr7:1391760-1395795 (+)
LP/J	MGP_LPJ_G0004407	antisense lncRNA gene	Chr7:1537991-1542029 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004336	antisense lncRNA gene	Chr7:1613202-1617237 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004517	antisense lncRNA gene	Chr7:1427172-1431229 (+)
PWK/PhJ	MGP_PWKPhJ_G0004231	antisense lncRNA gene	Chr7:1595551-1599687 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004173	antisense lncRNA gene	Chr7:1486040-1494064 (+)
WSB/EiJ	MGP_WSBEiJ_G0004317	antisense lncRNA gene	Chr7:1442358-1446425 (+)

Homology

• Gene Tree
  Gm15873
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000085725 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085725	Ensembl Gene Model | MGI Sequence Detail	4040	C57BL/6J
transcript	ENSMUST00000123390	Ensembl | MGI Sequence Detail	761	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm15873:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64338	Chr7:4529547-4529562 (+)	20 bp
Tssr64339	Chr7:4529591-4529605 (+)	63 bp