Gm16102 Pseudogene Detail

Summary

• Symbol
  Gm16102
• Name
  predicted gene 16102

• Feature Type
  pseudogene
• IDs
  MGI:3802041
  NCBI Gene: 100417474
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:44683439-44683858 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.63 cM

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802041	pseudogene	Chr1:44682952-44684058 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010099	pseudogene	Chr1:43673818-43674237 (+)
A/J	MGP_AJ_G0010087	pseudogene	Chr1:42338958-42339377 (+)
AKR/J	MGP_AKRJ_G0010068	pseudogene	Chr1:42928200-42928619 (+)
BALB/cJ	MGP_BALBcJ_G0010074	pseudogene	Chr1:41997103-41997522 (+)
C3H/HeJ	MGP_C3HHeJ_G0010005	pseudogene	Chr1:43354165-43354584 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010323	pseudogene	Chr1:45425108-45425527 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009082	pseudogene	Chr1:39120776-39121183 (+)
CAST/EiJ	MGP_CASTEiJ_G0009834	pseudogene	Chr1:43303479-43303898 (+)
CBA/J	MGP_CBAJ_G0009975	pseudogene	Chr1:46742596-46743015 (+)
DBA/2J	MGP_DBA2J_G0009999	pseudogene	Chr1:41620239-41620658 (+)
FVB/NJ	MGP_FVBNJ_G0010026	pseudogene	Chr1:41115130-41115549 (+)
LP/J	MGP_LPJ_G0010090	pseudogene	Chr1:44017080-44017499 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009983	pseudogene	Chr1:48767408-48767827 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010301	pseudogene	Chr1:43129608-43130027 (+)
PWK/PhJ	MGP_PWKPhJ_G0009744	pseudogene	Chr1:41470078-41470497 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009558	pseudogene	Chr1:43144851-43145270 (+)
WSB/EiJ	MGP_WSBEiJ_G0009903	pseudogene	Chr1:43132806-43133225 (+)

Homology

• Gene Tree
  Gm16102
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16102
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000089877 (Evidence)
• NCBI Gene
  100417474

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089877	Ensembl Gene Model | MGI Sequence Detail	420	C57BL/6J
transcript	ENSMUST00000160955	Ensembl | MGI Sequence Detail	420	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;