Gm15849 Gene Detail

Summary

• Symbol
  Gm15849
• Name
  predicted gene 15849

• Feature Type
  lncRNA gene
• IDs
  MGI:3802034
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:132308867-132310247 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 57.24 cM

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802034	lncRNA gene	Chr1:132308867-132310247 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002742	antisense lncRNA gene	Chr1:135860841-135862223 (+)
A/J	MGP_AJ_G0002718	antisense lncRNA gene	Chr1:130824737-130826119 (+)
AKR/J	MGP_AKRJ_G0002699	antisense lncRNA gene	Chr1:134672405-134673788 (+)
BALB/cJ	MGP_BALBcJ_G0002705	antisense lncRNA gene	Chr1:131157180-131158562 (+)
C3H/HeJ	MGP_C3HHeJ_G0002663	antisense lncRNA gene	Chr1:134820563-134821945 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002848	antisense lncRNA gene	Chr1:140901652-140903032 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002395	antisense lncRNA gene	Chr1:123969990-123971605 (+)
CAST/EiJ	MGP_CASTEiJ_G0002636	antisense lncRNA gene	Chr1:133819885-133821283 (+)
CBA/J	MGP_CBAJ_G0002659	antisense lncRNA gene	Chr1:145708626-145710008 (+)
DBA/2J	MGP_DBA2J_G0002665	antisense lncRNA gene	Chr1:129790053-129791436 (+)
FVB/NJ	MGP_FVBNJ_G0002685	antisense lncRNA gene	Chr1:128420352-128421734 (+)
LP/J	MGP_LPJ_G0002743	antisense lncRNA gene	Chr1:137168099-137169479 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002675	antisense lncRNA gene	Chr1:151507488-151508869 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002853	antisense lncRNA gene	Chr1:134424980-134426363 (+)
PWK/PhJ	MGP_PWKPhJ_G0002593	antisense lncRNA gene	Chr1:128778867-128780250 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002545	antisense lncRNA gene	Chr1:133390021-133391420 (+)
WSB/EiJ	MGP_WSBEiJ_G0002665	antisense lncRNA gene	Chr1:134425699-134427080 (+)

Homology

• Gene Tree
  Gm15849
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm15849
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090079 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090079	Ensembl Gene Model | MGI Sequence Detail	1381	C57BL/6J
transcript	ENSMUST00000159257	Ensembl | MGI Sequence Detail	335	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9