Gm16059 Gene Detail

Summary

• Symbol
  Gm16059
• Name
  predicted gene 16059

• Feature Type
  lncRNA gene
• IDs
  MGI:3802029
  NCBI Gene: 115488494
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:79310686-79313480 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 37.71 cM

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802029	lncRNA gene	Chr15:79310686-79315829 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003296	antisense lncRNA gene	Chr15:79692958-79697344 (+)
A/J	MGP_AJ_G0003272	antisense lncRNA gene	Chr15:76949297-76953682 (+)
AKR/J	MGP_AKRJ_G0003255	antisense lncRNA gene	Chr15:79097902-79102288 (+)
BALB/cJ	MGP_BALBcJ_G0003261	antisense lncRNA gene	Chr15:76941315-76945700 (+)
C3H/HeJ	MGP_C3HHeJ_G0003214	antisense lncRNA gene	Chr15:79088392-79092777 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003403	antisense lncRNA gene	Chr15:82847033-82851425 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002925	antisense lncRNA gene	Chr15:73428973-73433706 (+)
CAST/EiJ	MGP_CASTEiJ_G0003180	antisense lncRNA gene	Chr15:79791435-79795833 (+)
CBA/J	MGP_CBAJ_G0003211	antisense lncRNA gene	Chr15:85414771-85419156 (+)
DBA/2J	MGP_DBA2J_G0003216	antisense lncRNA gene	Chr15:76430243-76434628 (+)
FVB/NJ	MGP_FVBNJ_G0003235	antisense lncRNA gene	Chr15:75461785-75466170 (+)
LP/J	MGP_LPJ_G0003289	antisense lncRNA gene	Chr15:79882572-79888233 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003224	antisense lncRNA gene	Chr15:90526411-90530797 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003405	antisense lncRNA gene	Chr15:79109092-79113637 (+)
PWK/PhJ	MGP_PWKPhJ_G0003137	antisense lncRNA gene	Chr15:76441393-76446194 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003083	antisense lncRNA gene	Chr15:78925843-78931075 (+)
WSB/EiJ	MGP_WSBEiJ_G0003214	antisense lncRNA gene	Chr15:79493091-79498236 (+)

Homology

• Gene Tree
  Gm16059
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  20 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm16059
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000085802 (Evidence)
• NCBI Gene
  115488494

Representative Sequences			Length	Strain/Species
genomic	115488494	NCBI Gene Model | MGI Sequence Detail	2795	C57BL/6J
transcript	XR_003951551	RefSeq | MGI Sequence Detail	683	C57BL/6J

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 20
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Gm16059:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132096	Chr15:79313180-79313187 (+)	2,498 bp