Gm15880 Gene Detail

Summary

• Symbol
  Gm15880
• Name
  predicted gene 15880

• Feature Type
  lncRNA gene
• IDs
  MGI:3802014
  NCBI Gene: 100504375
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:80285765-80294132 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.66 cM

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802014	lncRNA gene	Chr7:80285765-80294132 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004473	antisense lncRNA gene	Chr7:82620058-82628395 (+)
A/J	MGP_AJ_G0004453	antisense lncRNA gene	Chr7:80686931-80695256 (+)
AKR/J	MGP_AKRJ_G0004436	antisense lncRNA gene	Chr7:82450148-82458473 (+)
BALB/cJ	MGP_BALBcJ_G0004438	antisense lncRNA gene	Chr7:80361150-80369475 (+)
C3H/HeJ	MGP_C3HHeJ_G0004387	antisense lncRNA gene	Chr7:83078967-83087320 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004589	antisense lncRNA gene	Chr7:85858236-85866579 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004043	antisense lncRNA gene	Chr7:83204528-83212814 (+)
CAST/EiJ	MGP_CASTEiJ_G0004347	antisense lncRNA gene	Chr7:73973548-73981926 (+)
CBA/J	MGP_CBAJ_G0004382	antisense lncRNA gene	Chr7:88712455-88720794 (+)
DBA/2J	MGP_DBA2J_G0004396	antisense lncRNA gene	Chr7:79242297-79250650 (+)
FVB/NJ	MGP_FVBNJ_G0004413	antisense lncRNA gene	Chr7:79165110-79173435 (+)
LP/J	MGP_LPJ_G0004477	antisense lncRNA gene	Chr7:83857663-83865996 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004403	antisense lncRNA gene	Chr7:88853265-88861618 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004587	antisense lncRNA gene	Chr7:81875350-81883675 (+)
PWK/PhJ	MGP_PWKPhJ_G0004300	antisense lncRNA gene	Chr7:72436542-72444960 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004241	antisense lncRNA gene	Chr7:68876865-68885347 (+)
WSB/EiJ	MGP_WSBEiJ_G0004386	antisense lncRNA gene	Chr7:82234875-82243233 (+)

Homology

• Gene Tree
  Gm15880
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm15880
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000084821 (Evidence)
• NCBI Gene
  100504375

Representative Sequences			Length	Strain/Species
genomic	100504375	NCBI Gene Model | MGI Sequence Detail	8368	C57BL/6J
transcript	NR_040343	RefSeq | MGI Sequence Detail	2884	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 19

  Phenotypes 11
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67