Gm15990 Gene Detail

Summary

• Symbol
  Gm15990
• Name
  predicted gene 15990

• Feature Type
  lncRNA gene
• IDs
  MGI:3801993
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:85961691-85965718 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 42.05 cM

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801993	lncRNA gene	Chr10:85961691-85965718 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002887	antisense lncRNA gene	Chr10:87074580-87078607 (+)
A/J	MGP_AJ_G0002864	antisense lncRNA gene	Chr10:84174276-84178303 (+)
AKR/J	MGP_AKRJ_G0002845	antisense lncRNA gene	Chr10:86530455-86534482 (+)
BALB/cJ	MGP_BALBcJ_G0002852	antisense lncRNA gene	Chr10:84401229-84405256 (+)
C3H/HeJ	MGP_C3HHeJ_G0002808	antisense lncRNA gene	Chr10:86551760-86555787 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002995	antisense lncRNA gene	Chr10:90032549-90036576 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002538	antisense lncRNA gene	Chr10:80001112-80005199 (+)
CAST/EiJ	MGP_CASTEiJ_G0002780	antisense lncRNA gene	Chr10:86423013-86427036 (+)
CBA/J	MGP_CBAJ_G0002804	antisense lncRNA gene	Chr10:93755499-93759526 (+)
DBA/2J	MGP_DBA2J_G0002811	antisense lncRNA gene	Chr10:83285800-83289826 (+)
FVB/NJ	MGP_FVBNJ_G0002830	antisense lncRNA gene	Chr10:82553411-82557437 (+)
LP/J	MGP_LPJ_G0002887	antisense lncRNA gene	Chr10:87743370-87747397 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002819	antisense lncRNA gene	Chr10:95369765-95373792 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002998	antisense lncRNA gene	Chr10:86402495-86406522 (+)
PWK/PhJ	MGP_PWKPhJ_G0002738	antisense lncRNA gene	Chr10:83296956-83301002 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002687	antisense lncRNA gene	Chr10:85051252-85055261 (+)
WSB/EiJ	MGP_WSBEiJ_G0002809	antisense lncRNA gene	Chr10:86365275-86369302 (+)

Homology

• Gene Tree
  Gm15990
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15990
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087256 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087256	Ensembl Gene Model | MGI Sequence Detail	4028	C57BL/6J
transcript	ENSMUST00000132223	Ensembl | MGI Sequence Detail	3321	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm15990:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94956	Chr10:85960274-85960307 (+)	-1,400 bp