Gm15877 Pseudogene Detail

Summary

• Symbol
  Gm15877
• Name
  predicted gene 15877

• Feature Type
  pseudogene
• IDs
  MGI:3801978
  NCBI Gene: 100416231
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:12251332-12252295 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 7.53 cM

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801978	pseudogene	Chr7:12251240-12252350 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013805	pseudogene	Chr7:9907672-9908635 (+)
A/J	MGP_AJ_G0013800	pseudogene	Chr7:9773044-9774007 (+)
AKR/J	MGP_AKRJ_G0013750	pseudogene	Chr7:9966375-9967338 (+)
BALB/cJ	MGP_BALBcJ_G0013782	pseudogene	Chr7:9875814-9876777 (+)
C3H/HeJ	MGP_C3HHeJ_G0013608	pseudogene	Chr7:10068168-10069131 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014175	pseudogene	Chr7:10482105-10483068 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012107	pseudogene	Chr7:11371952-11372943 (+)
CAST/EiJ	MGP_CASTEiJ_G0013290	pseudogene	Chr7:7640048-7641011 (+)
CBA/J	MGP_CBAJ_G0013585	pseudogene	Chr7:10617226-10618189 (+)
DBA/2J	MGP_DBA2J_G0013666	pseudogene	Chr7:9648498-9649461 (+)
FVB/NJ	MGP_FVBNJ_G0013665	pseudogene	Chr7:9641046-9642005 (+)
LP/J	MGP_LPJ_G0013748	pseudogene	Chr7:9956651-9957614 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014156	pseudogene	Chr7:9773589-9774552 (+)
PWK/PhJ	MGP_PWKPhJ_G0013102	pseudogene	Chr7:8118818-8119781 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012881	pseudogene	Chr7:5872561-5873511 (+)
WSB/EiJ	MGP_WSBEiJ_G0013350	pseudogene	Chr7:9770379-9771342 (+)

Homology

• Gene Tree
  Gm15877
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081550 (Evidence)
• NCBI Gene
  100416231

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081550	Ensembl Gene Model | MGI Sequence Detail	964	C57BL/6J
transcript	ENSMUST00000121897	Ensembl | MGI Sequence Detail	964	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;