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Gm16006 Gene Detail
Summary
  • Symbol
    Gm16006
  • Name
    predicted gene 16006
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3801853
    NCBI Gene: 105245957
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:57571510-57572340 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 24.02 cM
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3801853
 lncRNA gene Chr15:57571510-57572340 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003284
 antisense lncRNA gene Chr15:56846966-56847777 (-)
A/J MGP_AJ_G0003260
 antisense lncRNA gene Chr15:54615371-54616184 (-)
AKR/J MGP_AKRJ_G0003243
 antisense lncRNA gene Chr15:56108515-56109326 (-)
BALB/cJ MGP_BALBcJ_G0003249
 antisense lncRNA gene Chr15:54842486-54843299 (-)
C3H/HeJ MGP_C3HHeJ_G0003202
 antisense lncRNA gene Chr15:56249047-56249860 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003391
 antisense lncRNA gene Chr15:59069173-59069986 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002914
 antisense lncRNA gene Chr15:51718377-51719068 (-)
CAST/EiJ MGP_CASTEiJ_G0003168
 antisense lncRNA gene Chr15:56862488-56863317 (-)
CBA/J MGP_CBAJ_G0003199
 antisense lncRNA gene Chr15:61115087-61115900 (-)
DBA/2J MGP_DBA2J_G0003204
 antisense lncRNA gene Chr15:54543117-54543930 (-)
FVB/NJ MGP_FVBNJ_G0003223
 antisense lncRNA gene Chr15:53593541-53594354 (-)
LP/J MGP_LPJ_G0003277
 antisense lncRNA gene Chr15:56691980-56692791 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003212
 antisense lncRNA gene Chr15:66215554-66216481 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003393
 antisense lncRNA gene Chr15:56537624-56538437 (-)
PWK/PhJ MGP_PWKPhJ_G0003125
 antisense lncRNA gene Chr15:54538818-54539645 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003071
 antisense lncRNA gene Chr15:56312299-56313151 (-)
WSB/EiJ MGP_WSBEiJ_G0003202
 antisense lncRNA gene Chr15:56510972-56511786 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    3
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    4 involving Gm16006
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090002 Ensembl Gene Model | MGI Sequence Detail 831 C57BL/6J ±  kb
transcript ENSMUST00000160938 Ensembl | MGI Sequence Detail 583 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 19
    Diseases 1
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory