Gm16150 Gene Detail

Summary

• Symbol
  Gm16150
• Name
  predicted gene 16150

• Feature Type
  lncRNA gene
• IDs
  MGI:3801827
  NCBI Gene: 102638318
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:38274501-38285747 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 16.64 cM

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801827	lncRNA gene	Chr1:38257962-38286732 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002666	antisense lncRNA gene	Chr1:36901712-36912939 (+)
A/J	MGP_AJ_G0002642	antisense lncRNA gene	Chr1:35896292-35908568 (+)
AKR/J	MGP_AKRJ_G0002622	antisense lncRNA gene	Chr1:36385402-36396547 (+)
BALB/cJ	MGP_BALBcJ_G0002628	antisense lncRNA gene	Chr1:35542859-35554079 (+)
C3H/HeJ	MGP_C3HHeJ_G0002588	antisense lncRNA gene	Chr1:36609272-36620507 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002772	antisense lncRNA gene	Chr1:38494430-38505662 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002319	antisense lncRNA gene	Chr1:32866075-32877286 (+)
CAST/EiJ	MGP_CASTEiJ_G0002561	antisense lncRNA gene	Chr1:36477836-36489065 (+)
CBA/J	MGP_CBAJ_G0002583	antisense lncRNA gene	Chr1:39556051-39568657 (+)
DBA/2J	MGP_DBA2J_G0002588	antisense lncRNA gene	Chr1:35188694-35199872 (+)
FVB/NJ	MGP_FVBNJ_G0002608	antisense lncRNA gene	Chr1:34722108-34729057 (+)
LP/J	MGP_LPJ_G0002668	antisense lncRNA gene	Chr1:37250332-37261567 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002599	antisense lncRNA gene	Chr1:41706754-41717969 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002777	antisense lncRNA gene	Chr1:36453591-36464756 (+)
PWK/PhJ	MGP_PWKPhJ_G0002518	antisense lncRNA gene	Chr1:34979194-34990196 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002472	antisense lncRNA gene	Chr1:36404272-36415879 (+)
WSB/EiJ	MGP_WSBEiJ_G0002590	antisense lncRNA gene	Chr1:36419039-36425978 (+)

Homology

• Gene Tree
  Gm16150
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16150
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  8

• Ensembl
  ENSMUSG00000085391 (Evidence)
• NCBI Gene
  102638318

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085391	Ensembl Gene Model | MGI Sequence Detail	11247	C57BL/6J
transcript	ENSMUST00000133299	Ensembl | MGI Sequence Detail	673	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;