Gm15878 Pseudogene Detail

Summary

• Symbol
  Gm15878
• Name
  predicted gene 15878

• Feature Type
  pseudogene
• IDs
  MGI:3801745
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:46402649-46402954 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 25.93 cM

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801745	pseudogene	Chr8:46402649-46402954 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010824	pseudogene	Chr11:97964425-97964732 (-)
A/J	MGP_AJ_G0014090	pseudogene	Chr8:43289380-43289685 (+)
AKR/J	MGP_AKRJ_G0010781	pseudogene	Chr11:96911986-96912293 (-)
BALB/cJ	MGP_BALBcJ_G0014043	pseudogene	Chr8:43468770-43469075 (+)
C3H/HeJ	MGP_C3HHeJ_G0013875	pseudogene	Chr8:45078375-45078680 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009689	pseudogene	Chr11:91486557-91486863 (-)
CAST/EiJ	MGP_CASTEiJ_G0010527	pseudogene	Chr11:97852468-97852775 (-)
CBA/J	MGP_CBAJ_G0013856	pseudogene	Chr8:48616589-48616894 (+)
DBA/2J	MGP_DBA2J_G0013935	pseudogene	Chr8:43097795-43098100 (+)
FVB/NJ	MGP_FVBNJ_G0010735	pseudogene	Chr11:93051101-93051408 (-)
LP/J	MGP_LPJ_G0010807	pseudogene	Chr11:98531350-98531657 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010709	pseudogene	Chr11:105189105-105189412 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010718	pseudogene	Chr10:41102313-41102620 (+)
PWK/PhJ	MGP_PWKPhJ_G0010416	pseudogene	Chr11:94519062-94519369 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010234	pseudogene	Chr11:96887784-96888090 (-)
WSB/EiJ	MGP_WSBEiJ_G0010581	pseudogene	Chr11:97106257-97106564 (-)

Homology

• Gene Tree
  Gm15878
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15878
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000087542 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087542	Ensembl Gene Model | MGI Sequence Detail	306	C57BL/6J
transcript	ENSMUST00000127561	Ensembl | MGI Sequence Detail	306	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;