Gm16105 Gene Detail

Summary

• Symbol
  Gm16105
• Name
  predicted gene 16105

• Feature Type
  lncRNA gene
• IDs
  MGI:3801737
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:81296993-81298806 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM

Strain
Comparison

• SNPs within 2kb
  17 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801737	lncRNA gene	Chr10:81296993-81298806 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002881	antisense lncRNA gene	Chr10:82182339-82184152 (+)
A/J	MGP_AJ_G0002858	antisense lncRNA gene	Chr10:79266575-79268388 (+)
AKR/J	MGP_AKRJ_G0002839	antisense lncRNA gene	Chr10:81442623-81444436 (+)
BALB/cJ	MGP_BALBcJ_G0002846	antisense lncRNA gene	Chr10:79488101-79489914 (+)
C3H/HeJ	MGP_C3HHeJ_G0002802	antisense lncRNA gene	Chr10:81543719-81545532 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002989	antisense lncRNA gene	Chr10:85003518-85005331 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002532	antisense lncRNA gene	Chr10:75464683-75466549 (+)
CAST/EiJ	MGP_CASTEiJ_G0002774	antisense lncRNA gene	Chr10:81783205-81785010 (+)
CBA/J	MGP_CBAJ_G0002798	antisense lncRNA gene	Chr10:88332241-88334054 (+)
DBA/2J	MGP_DBA2J_G0002805	antisense lncRNA gene	Chr10:78470893-78472706 (+)
FVB/NJ	MGP_FVBNJ_G0002824	antisense lncRNA gene	Chr10:77727903-77729716 (+)
LP/J	MGP_LPJ_G0002881	antisense lncRNA gene	Chr10:82627098-82628911 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002814	antisense lncRNA gene	Chr10:90166321-90168134 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002992	antisense lncRNA gene	Chr10:81452881-81454694 (+)
PWK/PhJ	MGP_PWKPhJ_G0002732	antisense lncRNA gene	Chr10:78375718-78377524 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002681	antisense lncRNA gene	Chr10:80404407-80406219 (+)
WSB/EiJ	MGP_WSBEiJ_G0002803	antisense lncRNA gene	Chr10:81495431-81497244 (+)

Homology

• Gene Tree
  Gm16105
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16105
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084849 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084849	Ensembl Gene Model | MGI Sequence Detail	1814	C57BL/6J
transcript	ENSMUST00000156926	Ensembl | MGI Sequence Detail	697	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16105:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94769	Chr10:81297399-81297401 (+)	407 bp