Gm15852 Gene Detail

Summary

• Symbol
  Gm15852
• Name
  predicted gene 15852

• Feature Type
  lncRNA gene
• IDs
  MGI:3801733
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:169760267-169761817 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 76.84 cM

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801733	lncRNA gene	Chr1:169760267-169761817 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015123	unclassified non-coding RNA gene	Chr1:175620907-175622427 (-)
A/J	MGP_AJ_G0015097	unclassified non-coding RNA gene	Chr1:168435905-168437426 (-)
AKR/J	MGP_AKRJ_G0015060	unclassified non-coding RNA gene	Chr1:173515307-173516857 (-)
BALB/cJ	MGP_BALBcJ_G0015060	unclassified non-coding RNA gene	Chr1:168930766-168932316 (-)
C3H/HeJ	MGP_C3HHeJ_G0014883	unclassified non-coding RNA gene	Chr1:173765880-173767400 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015516	unclassified non-coding RNA gene	Chr1:181433072-181434622 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013262	unclassified non-coding RNA gene	Chr1:160203745-160205242 (-)
CAST/EiJ	MGP_CASTEiJ_G0014437	unclassified non-coding RNA gene	Chr1:173384313-173385841 (-)
CBA/J	MGP_CBAJ_G0014862	unclassified non-coding RNA gene	Chr1:187888129-187890240 (-)
DBA/2J	MGP_DBA2J_G0014955	unclassified non-coding RNA gene	Chr1:167312140-167313690 (-)
FVB/NJ	MGP_FVBNJ_G0014966	unclassified non-coding RNA gene	Chr1:165687733-165689253 (-)
LP/J	MGP_LPJ_G0015037	unclassified non-coding RNA gene	Chr1:176676365-176677885 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014993	unclassified non-coding RNA gene	Chr1:195222543-195224063 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015555	unclassified non-coding RNA gene	Chr1:173397370-173398885 (-)
PWK/PhJ	MGP_PWKPhJ_G0014229	unclassified non-coding RNA gene	Chr1:166536313-166537831 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014017	unclassified non-coding RNA gene	Chr1:172166078-172167591 (-)
WSB/EiJ	MGP_WSBEiJ_G0014540	unclassified non-coding RNA gene	Chr1:173516566-173518087 (-)

Homology

• Gene Tree
  Gm15852
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm15852
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000089990 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089990	Ensembl Gene Model | MGI Sequence Detail	1551	C57BL/6J
transcript	ENSMUST00000159701	Ensembl | MGI Sequence Detail	915	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;