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Rnu4atac Gene Detail
Summary
  • Symbol
    Rnu4atac
  • Name
    RNA, U4atac small nuclear (U12-dependent splicing)
  • Synonyms
    Gm22710, U4atac
  • Feature Type
    snRNA gene
  • IDs
    MGI:3799640
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:118386871-118386995 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3799640
 snRNA gene Chr1:118386871-118386995 (-)
129S1/SvImJ MGP_129S1SvImJ_G0037174
 snRNA gene Chr1:121153758-121153882 (-)
A/J MGP_AJ_G0037159
 snRNA gene Chr1:116827731-116827855 (-)
AKR/J MGP_AKRJ_G0037108
 snRNA gene Chr1:120280208-120280332 (-)
BALB/cJ MGP_BALBcJ_G0037151
 snRNA gene Chr1:117087293-117087417 (-)
C3H/HeJ MGP_C3HHeJ_G0036836
 snRNA gene Chr1:120453128-120453252 (-)
C57BL/6NJ MGP_C57BL6NJ_G0037665
 snRNA gene Chr1:125774771-125774895 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0034699
 snRNA gene Chr1:110506497-110506620 (-)
CAST/EiJ MGP_CASTEiJ_G0036021
 snRNA gene Chr1:119174245-119174369 (-)
CBA/J MGP_CBAJ_G0036812
 snRNA gene Chr1:130145154-130145278 (-)
DBA/2J MGP_DBA2J_G0036988
 snRNA gene Chr1:115841835-115841959 (-)
FVB/NJ MGP_FVBNJ_G0036936
 snRNA gene Chr1:114569946-114570070 (-)
LP/J MGP_LPJ_G0037035
 snRNA gene Chr1:122498531-122498655 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036947
 snRNA gene Chr1:135939835-135939959 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0037784
 snRNA gene Chr1:119970852-119970976 (-)
PWK/PhJ MGP_PWKPhJ_G0035717
 snRNA gene Chr1:114814063-114814187 (-)
SPRET/EiJ MGP_SPRETEiJ_G0035521
 snRNA gene Chr1:118852531-118852654 (-)
WSB/EiJ MGP_WSBEiJ_G0036227
 snRNA gene Chr1:119863998-119864122 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    30
  • cDNA Data
    1
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000080542 Ensembl Gene Model | MGI Sequence Detail 125 C57BL/6J ±  kb
transcript ENSMUST00000116892 Ensembl | MGI Sequence Detail 125 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:5452487
References
more
  • Summaries
    All 7
    Developmental Gene Expression 3
    Gene Ontology 1
  • Earliest
    J:137509 Pessa HK, et al., The abundance of the spliceosomal snRNPs is not limiting the splicing of U12-type introns. RNA. 2006 Oct;12(10):1883-92
  • Latest
    J:319558 Bizen N, et al., Ddx20, an Olig2 binding factor, governs the survival of neural and oligodendrocyte progenitor cells via proper Mdm2 splicing and p53 suppression. Cell Death Differ. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory