Gm15708 Gene Detail

Summary

• Symbol
  Gm15708
• Name
  predicted gene 15708

• Feature Type
  lncRNA gene
• IDs
  MGI:3783149
  NCBI Gene: 100504231
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:144213871-144217323 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 83.27 cM

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783149	lncRNA gene	Chr5:144213871-144217324 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037050	sense intronic lncRNA gene	Chr5:149609530-149612929 (+)
A/J	MGP_AJ_G0037038	sense intronic lncRNA gene	Chr5:143187993-143192720 (+)
AKR/J	MGP_AKRJ_G0036986	sense intronic lncRNA gene	Chr5:147649139-147652541 (+)
BALB/cJ	MGP_BALBcJ_G0037029	sense intronic lncRNA gene	Chr5:144455558-144459147 (+)
C3H/HeJ	MGP_C3HHeJ_G0036716	sense intronic lncRNA gene	Chr5:148490452-148496093 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037541	sense intronic lncRNA gene	Chr5:155082270-155085658 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034588	sense intronic lncRNA gene	Chr5:136973167-136976397 (+)
CAST/EiJ	MGP_CASTEiJ_G0035904	sense intronic lncRNA gene	Chr5:148024708-148027988 (+)
CBA/J	MGP_CBAJ_G0036691	sense intronic lncRNA gene	Chr5:161449052-161458350 (+)
DBA/2J	MGP_DBA2J_G0036866	sense intronic lncRNA gene	Chr5:142936566-142940284 (+)
FVB/NJ	MGP_FVBNJ_G0036816	sense intronic lncRNA gene	Chr5:142158946-142162174 (+)
LP/J	MGP_LPJ_G0036913	sense intronic lncRNA gene	Chr5:150214192-150220784 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036823	sense intronic lncRNA gene	Chr5:163812913-163816295 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037659	sense intronic lncRNA gene	Chr5:147548262-147554604 (+)
PWK/PhJ	MGP_PWKPhJ_G0035596	sense intronic lncRNA gene	Chr5:142052598-142056136 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035405	sense intronic lncRNA gene	Chr5:145284045-145288932 (+)
WSB/EiJ	MGP_WSBEiJ_G0036104	sense intronic lncRNA gene	Chr5:148343521-148346947 (+)

Homology

• Gene Tree
  Gm15708
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086894 (Evidence)
• NCBI Gene
  100504231

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086894	Ensembl Gene Model | MGI Sequence Detail	3453	C57BL/6J
transcript	ENSMUST00000156467	Ensembl | MGI Sequence Detail	1765	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15708:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49706	Chr5:144214028-144214068 (+)	177 bp