Cox20b Pseudogene Detail

Summary

• Symbol
  Cox20b
• Name
  cytochrome c oxidase assembly protein 20B
• Synonyms
  Cox20-ps, Gm15683

• Feature Type
  pseudogene
• IDs
  MGI:3783125
  NCBI Gene: 115486470
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:100229474-100229826 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 54.36 cM

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783125	pseudogene	Chr7:100229457-100229901 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013976	pseudogene	Chr7:103473933-103474285 (+)
A/J	MGP_AJ_G0013994	pseudogene	Chr7:100865395-100865747 (+)
AKR/J	MGP_AKRJ_G0013929	pseudogene	Chr7:103265805-103266157 (+)
BALB/cJ	MGP_BALBcJ_G0013950	pseudogene	Chr7:100548385-100548737 (+)
C3H/HeJ	MGP_C3HHeJ_G0013787	pseudogene	Chr7:103648204-103648556 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014382	pseudogene	Chr7:107400216-107400568 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009366	pseudogene	Chr1:168189216-168192605 (+)
CAST/EiJ	MGP_CASTEiJ_G0013443	pseudogene	Chr7:95200101-95200453 (+)
CBA/J	MGP_CBAJ_G0013766	pseudogene	Chr7:111098730-111099082 (+)
DBA/2J	MGP_DBA2J_G0013843	pseudogene	Chr7:99200575-99200927 (+)
FVB/NJ	MGP_FVBNJ_G0013845	pseudogene	Chr7:98981169-98981521 (+)
LP/J	MGP_LPJ_G0013918	pseudogene	Chr7:104818543-104818895 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013871	pseudogene	Chr7:112510024-112510376 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014344	pseudogene	Chr7:102534678-102535030 (+)
PWK/PhJ	MGP_PWKPhJ_G0013257	pseudogene	Chr7:92317566-92317918 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013022	pseudogene	Chr7:89845520-89845872 (+)
WSB/EiJ	MGP_WSBEiJ_G0013505	pseudogene	Chr7:103234452-103234804 (+)

Homology

• Gene Tree
  Cox20b
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Cox20b
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081359 (Evidence)
• NCBI Gene
  115486470

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081359	Ensembl Gene Model | MGI Sequence Detail	353	C57BL/6J
transcript	ENSMUST00000119872	Ensembl | MGI Sequence Detail	353	Not Applicable

References

• Summaries
  All 14

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Cox20b:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68159	Chr7:100229485-100229509 (+)	23 bp