Gm15647 Gene Detail

Summary

• Symbol
  Gm15647
• Name
  predicted gene 15647

• Feature Type
  lncRNA gene
• IDs
  MGI:3783091
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:70918706-70919481 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 36.78 cM

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3783091	lncRNA gene	Chr10:70918706-70919481 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002865	antisense lncRNA gene	Chr10:71050473-71051248 (+)
A/J	MGP_AJ_G0002842	antisense lncRNA gene	Chr10:68617702-68618477 (+)
AKR/J	MGP_AKRJ_G0002822	antisense lncRNA gene	Chr10:70500262-70501037 (+)
BALB/cJ	MGP_BALBcJ_G0002829	antisense lncRNA gene	Chr10:68820380-68821155 (+)
C3H/HeJ	MGP_C3HHeJ_G0002786	antisense lncRNA gene	Chr10:70507257-70508032 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002972	antisense lncRNA gene	Chr10:73592324-73593099 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002515	antisense lncRNA gene	Chr10:65192418-65193194 (+)
CAST/EiJ	MGP_CASTEiJ_G0002758	antisense lncRNA gene	Chr10:70652867-70653642 (+)
CBA/J	MGP_CBAJ_G0002781	antisense lncRNA gene	Chr10:76438124-76438899 (+)
DBA/2J	MGP_DBA2J_G0002788	antisense lncRNA gene	Chr10:67971821-67972596 (+)
FVB/NJ	MGP_FVBNJ_G0002808	antisense lncRNA gene	Chr10:67144958-67145733 (+)
LP/J	MGP_LPJ_G0002864	antisense lncRNA gene	Chr10:71494491-71495266 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002798	antisense lncRNA gene	Chr10:78509187-78509962 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002975	antisense lncRNA gene	Chr10:70456132-70456907 (+)
PWK/PhJ	MGP_PWKPhJ_G0002716	antisense lncRNA gene	Chr10:67824341-67825116 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002666	antisense lncRNA gene	Chr10:69819682-69820457 (+)
WSB/EiJ	MGP_WSBEiJ_G0002787	antisense lncRNA gene	Chr10:70399872-70400647 (+)

Homology

• Gene Tree
  Gm15647
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15647
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000090212 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090212	Ensembl Gene Model | MGI Sequence Detail	776	C57BL/6J
transcript	ENSMUST00000160178	Ensembl | MGI Sequence Detail	691	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87