Gm15549 Pseudogene Detail

Summary

• Symbol
  Gm15549
• Name
  predicted gene 15549

• Feature Type
  pseudogene
• IDs
  MGI:3782998
  NCBI Gene: 100416244
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:69251519-69252140 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 33.88 cM

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782998	pseudogene	Chr8:69251518-69252225 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014079	pseudogene	Chr8:68926492-68927116 (+)
A/J	MGP_AJ_G0014098	pseudogene	Chr8:66146096-66146720 (+)
AKR/J	MGP_AKRJ_G0014026	pseudogene	Chr8:67953126-67953750 (+)
BALB/cJ	MGP_BALBcJ_G0014051	pseudogene	Chr8:66360883-66361507 (+)
C3H/HeJ	MGP_C3HHeJ_G0013882	pseudogene	Chr8:68677238-68677862 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014489	pseudogene	Chr8:71526585-71527206 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012326	pseudogene	Chr8:61026106-61026778 (+)
CAST/EiJ	MGP_CASTEiJ_G0013537	pseudogene	Chr8:68117164-68117788 (+)
CBA/J	MGP_CBAJ_G0013864	pseudogene	Chr8:74213181-74213805 (+)
DBA/2J	MGP_DBA2J_G0013942	pseudogene	Chr8:65867943-65868567 (+)
FVB/NJ	MGP_FVBNJ_G0013944	pseudogene	Chr8:65020641-65021265 (+)
LP/J	MGP_LPJ_G0014027	pseudogene	Chr8:69025566-69026190 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013972	pseudogene	Chr8:76876448-76877072 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014463	pseudogene	Chr8:68230013-68230637 (+)
PWK/PhJ	MGP_PWKPhJ_G0013349	pseudogene	Chr8:65109097-65109718 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013130	pseudogene	Chr8:67163713-67164337 (+)
WSB/EiJ	MGP_WSBEiJ_G0013599	pseudogene	Chr8:68599450-68600074 (+)

Homology

• Gene Tree
  Gm15549
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm15549
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081745 (Evidence)
• NCBI Gene
  100416244

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081745	Ensembl Gene Model | MGI Sequence Detail	622	C57BL/6J
transcript	ENSMUST00000121595	Ensembl | MGI Sequence Detail	622	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;