Gm15509 Gene Detail

Summary

• Symbol
  Gm15509
• Name
  predicted gene 15509

• Feature Type
  lncRNA gene
• IDs
  MGI:3782957
  NCBI Gene: 105244050
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:186853066-186856562 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 90.36 cM

Strain
Comparison

• SNPs within 2kb
  28 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782957	lncRNA gene	Chr1:186853066-186856562 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036884	sense intronic lncRNA gene	Chr1:193925050-193928542 (-)
A/J	MGP_AJ_G0036872	sense intronic lncRNA gene	Chr1:185985321-185988812 (-)
AKR/J	MGP_AKRJ_G0036820	sense intronic lncRNA gene	Chr1:191459589-191463080 (-)
BALB/cJ	MGP_BALBcJ_G0036863	sense intronic lncRNA gene	Chr1:186663893-186667384 (-)
C3H/HeJ	MGP_C3HHeJ_G0036548	sense intronic lncRNA gene	Chr1:192328409-192331900 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037377	sense intronic lncRNA gene	Chr1:200118796-200122292 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034438	sense intronic lncRNA gene	Chr1:176967550-176971181 (-)
CAST/EiJ	MGP_CASTEiJ_G0035737	sense intronic lncRNA gene	Chr1:191833007-191836506 (-)
CBA/J	MGP_CBAJ_G0036523	sense intronic lncRNA gene	Chr1:207569703-207573172 (-)
DBA/2J	MGP_DBA2J_G0036700	sense intronic lncRNA gene	Chr1:184752634-184756126 (-)
FVB/NJ	MGP_FVBNJ_G0036652	sense intronic lncRNA gene	Chr1:182832534-182836025 (-)
LP/J	MGP_LPJ_G0036747	sense intronic lncRNA gene	Chr1:195098311-195101803 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036658	sense intronic lncRNA gene	Chr1:214386227-214389718 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037493	sense intronic lncRNA gene	Chr1:191372636-191376132 (-)
PWK/PhJ	MGP_PWKPhJ_G0035431	sense intronic lncRNA gene	Chr1:183969693-183973184 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035244	sense intronic lncRNA gene	Chr1:190325124-190330031 (-)
WSB/EiJ	MGP_WSBEiJ_G0035938	sense intronic lncRNA gene	Chr1:191542131-191545617 (-)

Homology

• Gene Tree
  Gm15509
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000089947 (Evidence)
• NCBI Gene
  105244050

Representative Sequences			Length	Strain/Species
genomic	105244050	NCBI Gene Model | MGI Sequence Detail	3497	C57BL/6J
transcript	NR_151534	RefSeq | MGI Sequence Detail	2162	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;