Sec61g-ps1 Pseudogene Detail

Summary

• Symbol
  Sec61g-ps1
• Name
  SEC61 translocon subunit gamma, pseudogene 1
• Synonyms
  Gm4184

• Feature Type
  pseudogene
• IDs
  MGI:3782360
  NCBI Gene: 100043039
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:89714112-89714435 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 45.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  24 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782360	pseudogene	Chr10:89714112-89714435 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  SEC61G, SEC61 translocon subunit gamma

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SEC61G, SEC61 translocon subunit gamma
  
• Synonyms
  SSS1
• Links
  HGNC:18277

  NCBI Gene ID: 23480

  neXtProt AC: NX_P60059

  UniProt: P60059

  
  
• Chr Location
  7p11.2; chr7:54752250-54759974 (-)  GRCh38

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• MGI Vertebrate Homology
  Sec61g-ps1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SEC61G

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Transposon induced
  1
• Genomic Mutations
  2 involving Sec61g-ps1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  100043039

Representative Sequences			Length	Strain/Species
genomic	100043039	NCBI Gene Model | MGI Sequence Detail	324	C57BL/6J
transcript	AV070711	GenBank | ENA | DDBJ | MGI Sequence Detail	291	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Gene Ontology 1

  Phenotypes 6
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87