Gm3945 Pseudogene Detail

Summary

• Symbol
  Gm3945
• Name
  predicted gene 3945

• Feature Type
  pseudogene
• IDs
  MGI:3782119
  NCBI Gene: 100042642
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:54571674-54572356 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782119	pseudogene	Chr14:54571674-54572356 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011112	pseudogene	Chr14:48273777-48274460 (+)
A/J	MGP_AJ_G0011112	pseudogene	Chr14:47343162-47343845 (+)
AKR/J	MGP_AKRJ_G0011071	pseudogene	Chr14:49056383-49057066 (+)
BALB/cJ	MGP_BALBcJ_G0011081	pseudogene	Chr14:47313896-47314579 (+)
C3H/HeJ	MGP_C3HHeJ_G0010983	pseudogene	Chr14:48737391-48738074 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011374	pseudogene	Chr14:50728497-50729179 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009948	pseudogene	Chr14:45761688-45762370 (+)
CAST/EiJ	MGP_CASTEiJ_G0010798	pseudogene	Chr14:44974831-44975522 (+)
CBA/J	MGP_CBAJ_G0010959	pseudogene	Chr14:52227440-52228123 (+)
DBA/2J	MGP_DBA2J_G0011007	pseudogene	Chr14:47088817-47089500 (+)
FVB/NJ	MGP_FVBNJ_G0011010	pseudogene	Chr14:46541903-46542586 (+)
LP/J	MGP_LPJ_G0011093	pseudogene	Chr14:49287833-49288516 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011001	pseudogene	Chr14:51664537-51665220 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011350	pseudogene	Chr14:48239042-48239725 (+)
PWK/PhJ	MGP_PWKPhJ_G0010667	pseudogene	Chr14:43613159-43613842 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010491	pseudogene	Chr14:44229229-44229915 (+)
WSB/EiJ	MGP_WSBEiJ_G0010848	pseudogene	Chr14:48532823-48533506 (+)

Homology

• Gene Tree
  Gm3945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3945
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105667 (Evidence)
• NCBI Gene
  100042642

Representative Sequences			Length	Strain/Species
genomic	100042642	NCBI Gene Model | MGI Sequence Detail	683	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;