Gm3809 Pseudogene Detail

Summary

• Symbol
  Gm3809
• Name
  predicted gene 3809

• Feature Type
  pseudogene
• IDs
  MGI:3781982
  NCBI Gene: 100042375
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:186692705-186693710 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 90.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781982	pseudogene	Chr1:186692688-186693908 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010468	pseudogene	Chr1:193767991-193769009 (+)
A/J	MGP_AJ_G0010457	pseudogene	Chr1:185833146-185834151 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0010432	pseudogene	Chr1:186509364-186510653 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009381	pseudogene	Chr1:176812386-176813395 (+)
CAST/EiJ	MGP_CASTEiJ_G0010182	pseudogene	Chr1:191664323-191665279 (+)
CBA/J	MGP_CBAJ_G0010329	pseudogene	Chr1:207410342-207411347 (+)
DBA/2J	MGP_DBA2J_G0010360	pseudogene	Chr1:184600193-184601198 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010347	pseudogene	Chr1:214229716-214231636 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010676	pseudogene	Chr1:191209856-191212163 (+)
PWK/PhJ	MGP_PWKPhJ_G0010085	pseudogene	Chr1:183815548-183816681 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009899	pseudogene	Chr1:190160259-190164213 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm3809
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000097935 (Evidence)
• NCBI Gene
  100042375

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097935	Ensembl Gene Model | MGI Sequence Detail	1006	C57BL/6J
transcript	ENSMUST00000180973	Ensembl | MGI Sequence Detail	1006	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm3809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10636	Chr1:186692630-186692633 (+)	-73 bp