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Gm3716 Gene Detail
Summary
  • Symbol
    Gm3716
  • Name
    predicted gene 3716
  • Synonyms
    Gm1683, LOC381697
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3781892
    NCBI Gene: 100042198
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:64751206-64768042 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 32.92 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    148 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3781892
 lncRNA gene Chr5:64751135-64768077 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006656
 lincRNA gene Chr5:64184470-64201313 (-)
A/J MGP_AJ_G0006650
 lincRNA gene Chr5:61789273-61806120 (-)
AKR/J MGP_AKRJ_G0006620
 lincRNA gene Chr5:63717644-63734487 (-)
BALB/cJ MGP_BALBcJ_G0006625
 lincRNA gene Chr5:62464829-62481608 (-)
C3H/HeJ MGP_C3HHeJ_G0006572
 lincRNA gene Chr5:64085023-64101882 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006790
 lincRNA gene Chr5:66840082-66856914 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006050
 lincRNA gene Chr5:57896837-57914077 (-)
CAST/EiJ MGP_CASTEiJ_G0006494
 lincRNA gene Chr5:63162366-63179145 (-)
CBA/J MGP_CBAJ_G0006553
 lincRNA gene Chr5:68980910-68997763 (-)
DBA/2J MGP_DBA2J_G0006573
 lincRNA gene Chr5:61815566-61832429 (-)
FVB/NJ MGP_FVBNJ_G0006597
 lincRNA gene Chr5:60995528-61012351 (-)
LP/J MGP_LPJ_G0006657
 lincRNA gene Chr5:64649889-64666762 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006581
 lincRNA gene Chr5:71891650-71908499 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006792
 lincRNA gene Chr5:63412366-63429213 (-)
PWK/PhJ MGP_PWKPhJ_G0006433
 lincRNA gene Chr5:60789528-60806272 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006341
 lincRNA gene Chr5:62749754-62767274 (-)
WSB/EiJ MGP_WSBEiJ_G0006545
 lincRNA gene Chr5:63623439-63641399 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    26
  • Chemically induced (other)
    2
  • Gene trapped
    22
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving Gm3716
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100042198 NCBI Gene Model | MGI Sequence Detail 16837 C57BL/6J ±  kb
transcript NR_045078 RefSeq | MGI Sequence Detail 2872 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
Other
Accession IDs
less
MGI:2686529
References
more
  • Summaries
    All 32
    Phenotypes 21
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory