Gm3489 Pseudogene Detail

Summary

• Symbol
  Gm3489
• Name
  predicted gene 3489

• Feature Type
  pseudogene
• IDs
  MGI:3781666
  NCBI Gene: 100041738
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:44878331-44878858 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 23.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781666	pseudogene	Chr1:44849573-44878858 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010100	pseudogene	Chr1:43866290-43866780 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0010069	pseudogene	Chr1:43125001-43125490 (+)
BALB/cJ	MGP_BALBcJ_G0010075	pseudogene	Chr1:42162743-42163185 (+)
C3H/HeJ	MGP_C3HHeJ_G0010006	pseudogene	Chr1:43539274-43539730 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010324	pseudogene	Chr1:45651017-45651486 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009083	pseudogene	Chr1:39295635-39296115 (+)
CAST/EiJ	MGP_CASTEiJ_G0009835	pseudogene	Chr1:43493852-43494292 (+)
CBA/J	MGP_CBAJ_G0009976	pseudogene	Chr1:46953544-46954012 (+)
DBA/2J	MGP_DBA2J_G0010000	pseudogene	Chr1:41811765-41812254 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010091	pseudogene	Chr1:44217921-44218381 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009984	pseudogene	Chr1:48994873-48995341 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010302	pseudogene	Chr1:43329797-43330281 (+)
PWK/PhJ	MGP_PWKPhJ_G0009745	pseudogene	Chr1:41638916-41639396 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009559	pseudogene	Chr1:43337382-43337860 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm3489
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm3489
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000100434 (Evidence)
• NCBI Gene
  100041738

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100434	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000190083	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;