Gm3279 Gene Detail

Summary

• Symbol
  Gm3279
• Name
  predicted gene 3279

• Feature Type
  lncRNA gene
• IDs
  MGI:3781457
  NCBI Gene: 100041339
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:55661556-55671559 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781457	lncRNA gene	Chr6:55661556-55671559 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006971	lincRNA gene	Chr6:55102022-55112036 (+)
A/J	MGP_AJ_G0006966	lincRNA gene	Chr6:52540318-52550319 (+)
AKR/J	MGP_AKRJ_G0006936	lincRNA gene	Chr6:54317897-54327896 (+)
BALB/cJ	MGP_BALBcJ_G0006943	lincRNA gene	Chr6:52922546-52932547 (+)
C3H/HeJ	MGP_C3HHeJ_G0006887	lincRNA gene	Chr6:54351257-54361240 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007105	lincRNA gene	Chr6:56327252-56337255 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006352	lincRNA gene	Chr6:50146302-50156309 (+)
CAST/EiJ	MGP_CASTEiJ_G0006803	lincRNA gene	Chr6:54213110-54224548 (+)
CBA/J	MGP_CBAJ_G0006869	lincRNA gene	Chr6:58619839-58629842 (+)
DBA/2J	MGP_DBA2J_G0006889	lincRNA gene	Chr6:52439657-52449648 (+)
FVB/NJ	MGP_FVBNJ_G0006912	lincRNA gene	Chr6:52040165-52050146 (+)
LP/J	MGP_LPJ_G0006971	lincRNA gene	Chr6:55028290-55038386 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006892	lincRNA gene	Chr6:61126269-61136239 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007109	lincRNA gene	Chr6:54293078-54304911 (+)
PWK/PhJ	MGP_PWKPhJ_G0006743	lincRNA gene	Chr6:52109157-52119408 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006653	lincRNA gene	Chr6:53673402-53683161 (+)
WSB/EiJ	MGP_WSBEiJ_G0006858	lincRNA gene	Chr6:54331884-54341881 (+)

Homology

• Gene Tree
  Gm3279
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000108063 (Evidence)
• NCBI Gene
  100041339

Representative Sequences			Length	Strain/Species
genomic	100041339	NCBI Gene Model | MGI Sequence Detail	10004	C57BL/6J
transcript	NR_046071	RefSeq | MGI Sequence Detail	1092	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;