Gm2939 Pseudogene Detail

Summary

• Symbol
  Gm2939
• Name
  predicted gene 2939

• Feature Type
  pseudogene
• IDs
  MGI:3781117
  NCBI Gene: 100040741
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:151664822-151665299 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 76.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3781117	pseudogene	Chr3:151664822-151665302 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012471	pseudogene	Chr3:155795657-155796134 (+)
A/J	MGP_AJ_G0012467	pseudogene	Chr3:150146285-150146762 (-)
AKR/J	MGP_AKRJ_G0012431	pseudogene	Chr3:154094120-154094597 (-)
BALB/cJ	MGP_BALBcJ_G0012449	pseudogene	Chr3:149981585-149982062 (-)
C3H/HeJ	MGP_C3HHeJ_G0012312	pseudogene	Chr3:154546290-154546767 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012763	pseudogene	Chr3:160939623-160940100 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012077	pseudogene	Chr3:154611715-154612192 (+)
CBA/J	MGP_CBAJ_G0012292	pseudogene	Chr3:166701048-166701525 (+)
DBA/2J	MGP_DBA2J_G0012345	pseudogene	Chr3:149251199-149251676 (-)
FVB/NJ	MGP_FVBNJ_G0012347	pseudogene	Chr3:146638885-146639362 (-)
LP/J	MGP_LPJ_G0012421	pseudogene	Chr3:157160212-157160689 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012353	pseudogene	Chr3:175245149-175245626 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012766	pseudogene	Chr3:153803870-153804347 (-)
PWK/PhJ	MGP_PWKPhJ_G0011916	pseudogene	Chr3:149144624-149145101 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012105	pseudogene	Chr3:154803671-154804148 (+)

Homology

• Gene Tree
  Gm2939
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104770 (Evidence)
• NCBI Gene
  100040741

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104770	Ensembl Gene Model | MGI Sequence Detail	478	C57BL/6J
transcript	ENSMUST00000198496	Ensembl | MGI Sequence Detail	478	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;