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Kcnj13
Gene Detail
Symbol

Name
ID
Kcnj13
potassium inwardly-rectifying channel, subfamily J, member 13
MGI:3781032
Feature Type
protein coding gene
Genetic Map
Chromosome 1
44.30 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:87386363-87394729 bp, - strand
From VEGA annotation of GRCm38

  8367 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55638  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: KCNJ13
Protein SuperFamily: G protein-activated inward rectifier potassium channel
Gene Tree: Kcnj13

Human
homologs
KCNJ13, potassium channel, inwardly rectifying subfamily J, member 13
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 3769
neXtProt AC: NX_O60928

Human Synonyms: KIR1.4, KIR7.1, LCA16, SVD

Human Chr (Location): 2q37; chr2:232765802-232776565 (-)  GRCh38.p2

Disease Associations: (2) Diseases Associated with Human KCNJ13

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Kcnj13 interacts with 28 markers (Mir22, Mir132, Mir200b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
cDNA source data(2)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase kcnj13    NEW 
Molecular
reagents
All nucleic(2) cDNA(2)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000037066 (Evidence)
Ensembl Gene Model ENSMUSG00000079436 (Evidence)
Entrez Gene 100040591 (Evidence)
UniGene 443539
DFCI TC1605858
DoTS DT.101261884
NIA Mouse Gene Index U066543
Consensus CDS Project CCDS35653.1
International Mouse Phenotyping Consortium Status Kcnj13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037066 VEGA Gene Model | MGI Sequence Detail 8367 C57BL/6J ±  kb
transcript OTTMUST00000095333 VEGA | MGI Sequence Detail 1270 Not Applicable 
polypeptide OTTMUSP00000053198 VEGA | MGI Sequence Detail 360 Not Applicable 

For the selected sequences
All sequences(21) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(41 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR014756 Immunoglobulin E-set
InterPro IPR016449 Potassium channel, inwardly rectifying, Kir
InterPro IPR008062 Potassium channel, inwardly rectifying, Kir7
InterPro IPR013518 Potassium channel, inwardly rectifying, Kir, cytoplasmic
Protein Ontology PR:000002054 inward rectifier potassium channel 13
References
(Earliest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
(Latest) J:190524 Shalom-Barak T, et al., Placental PPARgamma regulates spatiotemporally diverse genes and a unique metabolic network. Dev Biol. 2012 Dec 1;372(1):143-55
All references(23)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory