Gm2773 Pseudogene Detail

Summary

• Symbol
  Gm2773
• Name
  predicted gene 2773

• Feature Type
  pseudogene
• IDs
  MGI:3780942
  NCBI Gene: 100040442
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:98998546-99022675 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 51.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780942	pseudogene	Chr9:98998546-99022675 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  28
• Chemically induced (other)
  1
• Gene trapped
  27
• Genomic Mutations
  1 involving Gm2773
• Find Mice (IMSR)
  2 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  100040442

Representative Sequences			Length	Strain/Species
genomic	100040442	NCBI Gene Model | MGI Sequence Detail	24130	C57BL/6J
transcript	AI504243	GenBank | ENA | DDBJ | MGI Sequence Detail	391	(C57BL/6J x DBA/2J)F1/J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm2773:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86675	Chr9:99021566-99021583 (+)	23,029 bp